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AT2G28480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding CRS1 / YhbY (CRM) domain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT4G13070.1); Has 308 Blast hits to 279 proteins in 29 species: Archae - 0; Bacteria - 5; Metazoa - 22; Fungi - 0; Plants - 268; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS9DeggNOG:KOG1990EMBL:AC006587EMBL:AK226713
EMBL:BT011753EMBL:CP002685EnsemblPlants:AT2G28480EnsemblPlants:AT2G28480.1
entrez:817396Gene3D:3.30.110.60GeneID:817396GO:GO:0003723
Gramene:AT2G28480.1hmmpanther:PTHR31426hmmpanther:PTHR31426:SF2HOGENOM:HOG000241798
InterPro:IPR001890KEGG:ath:AT2G28480ncoils:CoilOMA:RSNYVPI
Pfam:PF01985Pfscan:PS51295PhylomeDB:Q9SK10PIR:D84685
PROSITE:PS51295Proteomes:UP000006548RefSeq:NP_180415.1SMART:SM01103
SMR:Q9SK10STRING:3702.AT2G28480.1SUPFAM:SSF75471TAIR:AT2G28480
UniGene:At.50106UniProt:Q9SK10
Coordinates (TAIR10) chr2:-:12176642..12178031
Molecular Weight (calculated) 42967.20 Da
IEP (calculated) 9.75
GRAVY (calculated) -0.81
Length 372 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIAFARGLR KASSFLRSSY PLLISSRLLP ISQEFYDSTL TFVLPTRPIC RNFSHGYGTV NLVISEGKPK FETRELDPPK KYKWLTKKRL KLKRKKEREE
101: RNAANRKDPR RLTVKGKKKK FVNAEERIKY KLEKAKIKEA LLIERLKRYE VAKVQGPEVR PHEITGEERF YLKKMGQKRS NYVPIGRRGV FGGVILNMHL
201: HWKKHETVKV ICNNSKPGQV QQYAEELAKL SGGVPVNIIG DDTIIFYRGK GYVQPQVMSP IDTLSKKRAY EKSKYEQSLE SVRHFIAIAE KELELYYRHV
301: ALYDDPNNRN PLSILDDSPS ESRQHHENEF FLSCSDTDSS SEDEDEDEEL CELDNGSSSS SSAKEELSES EN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)