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AT2G28180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.547
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cation/hydrogen exchanger family protein
Curator
Summary (TAIR10)
member of Putative Na+/H+ antiporter family
Computational
Description (TAIR10)
ATCHX8; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 6A (TAIR:AT1G08140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioGrid:2714eggNOG:COG0475eggNOG:KOG1650EMBL:AC005851
EMBL:AY926468EMBL:CP002685EnsemblPlants:AT2G28180EnsemblPlants:AT2G28180.1
entrez:817364GeneID:817364Genevisible:Q58P71GO:GO:0006813
GO:GO:0015299GO:GO:0016021Gramene:AT2G28180.1hmmpanther:PTHR32468
hmmpanther:PTHR32468:SF17HOGENOM:HOG000091141InParanoid:Q58P71InterPro:IPR006153
KEGG:ath:AT2G28180PaxDb:Q58P71Pfam:PF00999Pfam:Q58P71
PhylomeDB:Q58P71PIR:G84681PRIDE:Q58P71PRO:PR:Q58P71
ProteinModelPortal:Q58P71Proteomes:UP000006548RefSeq:NP_180385.2STRING:3702.AT2G28180.1
TAIR:AT2G28180tair10-symbols:ATCHX8tair10-symbols:CHX08tair10-symbols:CHX8
TCDB:2.A.37.4.4TMHMM:TMhelixUniGene:At.38653UniProt:Q58P71
Coordinates (TAIR10) chr2:-:12010994..12013832
Molecular Weight (calculated) 93701.70 Da
IEP (calculated) 7.20
GRAVY (calculated) 0.37
Length 847 amino acids
Sequence (TAIR10)
(BLAST)
001: MEMGNGTGPG MSGAFSGGGN EILGMGGGGG IMGGGDISHM SPEVKWIFEM AWYGETVRYD GLICEEHPPK LSSDGIWEKL IIKSAGLYFW QYRLPKLEIV
101: ILLVFFLWQG FNILFKKLGL SIPKLSSMML AGLLLNVLVT LSGENSIIAD ILVTKNRIDV AGCLGSFGFL IFWFLKGVRM DVKRIFKAEA KARVTGVAAV
201: TFPIVVGFLL FNLKSAKNRP LTFQEYDVML LMESITSFSG IARLLRDLGM NHSSIGRVAL SSALVSDIVG LLLLIANVSR SSATLADGLA ILTEITLFLV
301: IAFAVVRPIM FKIIKRKGEG RPIEDKYIHG VLVLVCLSCM YWEDLSQFPP LGAFFLGLAI PNGPPIGSAL VERLESFNFG IILPLFLTAV MLRTDTTAWK
401: GALTFFSGDD KKFAVASLVL LIFLLKLSVS VIVPYLYKMP LRDSIILALI MSHKGIIELS FYLFSLSLKL VTKDTFSILV LSIVLNSLLI PMAIGFLYDP
501: SKQFICYQKR NLASMKNMGE LKTLVCIHRP DHISSMINLL EASYQSEDSP LTCYVLHLVE LRGQDVPTLI SHKVQKLGVG AGNKYSENVI LSFEHFHRSV
601: CSSISIDTFT CIANANHMQD DICWLALDKA VTLIILPFHR TWSLDRTSIV SDVEAIRFLN VNVLKQAPCS VGILIERHLV NKKQEPHESL KVCVIFVGGK
701: DDREALAFAK RMARQENVTL TVLRLLASGK SKDATGWDQM LDTVELRELI KSNNAGMVKE ETSTIYLEQE ILDGADTSML LRSMAFDYDL FVVGRTCGEN
801: HEATKGIENW CEFEELGVIG DFLASPDFPS KTSVLVVQQQ RTVANNN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)