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AT2G27200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.976
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G08410.1); Has 7321 Blast hits to 7198 proteins in 1972 species: Archae - 116; Bacteria - 4700; Metazoa - 639; Fungi - 504; Plants - 290; Viruses - 0; Other Eukaryotes - 1072 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1161eggNOG:KOG1424EMBL:AC007290EMBL:BT022030
EMBL:CP002685EnsemblPlants:AT2G27200EnsemblPlants:AT2G27200.1entrez:817262
Gene3D:3.40.50.300GeneID:817262Genevisible:Q9SHS8GO:GO:0003924
GO:GO:0005525GO:GO:0005829GO:GO:0042254Gramene:AT2G27200.1
hmmpanther:PTHR11089hmmpanther:PTHR11089:SF7HOGENOM:HOG000172552InterPro:IPR006073
InterPro:IPR027417InterPro:IPR030378KEGG:ath:AT2G27200KO:K14539
OMA:MREEALHPaxDb:Q9SHS8Pfam:PF01926Pfam:Q9SHS8
Pfscan:PS51721PhylomeDB:Q9SHS8PIR:A84670PRIDE:Q9SHS8
PRINTS:PR00326PRO:PR:Q9SHS8PROSITE:PS51721ProteinModelPortal:Q9SHS8
Proteomes:UP000006548RefSeq:NP_180288.1SMR:Q9SHS8STRING:3702.AT2G27200.1
SUPFAM:SSF52540TAIR:AT2G27200UniGene:At.38801UniProt:Q9SHS8
Coordinates (TAIR10) chr2:+:11625449..11627959
Molecular Weight (calculated) 60761.30 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.59
Length 537 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKNEKTSLG RALVKHHNHM IQETKEKGKS YKDQHKKVLE SVTEVSDIDA IIEQAEEAER LFAIHHDSAT PVPINMDTGS SSSGITAKEW KEQRMREEAL
101: HASSLQVPRR PHWTPKMNVE KLDANEKQAF LTWRRKLASL EENEKLVLTP FEKNLDIWRQ LWRVLERSDL IVMVVDARDP LFYRCPDLEA YAQEIDEHKK
201: TMLLVNKADL LPSYVREKWA EYFSRNNILF VFWSAKAATA TLEGKPLKEQ WRAPDTTQKT DNPAVKVYGR DDLLDRLKLE ALEIVKMRKS RGVSATSTES
301: HCEQVVVGFV GYPNVGKSST INALVGQKRT GVTSTPGKTK HFQTLIISED LMLCDCPGLV FPSFSSSRYE MVASGVLPID RMTEHLEAIK VVAELVPRHA
401: IEDVYNISLP KPKSYEPQSR PPLASELLRT YCLSRGYVAS SGLPDETRAA RQILKDYIEG KLPHFAMPPE ITRDDENETA DDTLGAETRE GSQTEKKGEE
501: APSLGLDQVL DDLSSFDLAN GLVSSKTKQH KKSHRKQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)