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AT2G27030.2
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : calmodulin 5
Curator
Summary (TAIR10)
encodes a calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6.
Computational
Description (TAIR10)
calmodulin 5 (CAM5); FUNCTIONS IN: calcium ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 3 (TAIR:AT3G56800.1); Has 30900 Blast hits to 21220 proteins in 1706 species: Archae - 2; Bacteria - 104; Metazoa - 13572; Fungi - 6328; Plants - 6663; Viruses - 0; Other Eukaryotes - 4231 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5126eggNOG:KOG0027EMBL:CP002685EnsemblPlants:AT2G27030
EnsemblPlants:AT2G27030.2entrez:817245entrez:818710entrez:824847
ExpressionAtlas:F4IVN8Gene3D:1.10.238.10GeneID:817245GO:GO:0005509
Gramene:AT2G27030.2hmmpanther:PTHR23050hmmpanther:PTHR23050:SF166InterPro:IPR002048
InterPro:IPR011992InterPro:IPR018247PaxDb:F4IVN8Pfam:PF13499
Pfam:PF13833Pfscan:PS50222PRIDE:F4IVN8PROSITE:PS00018
PROSITE:PS50222ProteinModelPortal:F4IVN8Proteomes:UP000006548RefSeq:NP_850096.1
scanprosite:PS00018SMART:SM00054SMR:F4IVN8STRING:3702.AT2G27030.3
SUPFAM:SSF47473TAIR:AT2G27030tair10-symbols:CAM5UniGene:At.23067
UniGene:At.23711UniGene:At.48576UniGene:At.67188UniProt:F4IVN8
Coordinates (TAIR10) chr2:+:11532719..11533060
Molecular Weight (calculated) 12869.00 Da
IEP (calculated) 3.94
GRAVY (calculated) -0.68
Length 113 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSLGQNPTE AELQDMINEV DADGNGTIDF PEFLNLMARK MKDTDSEEEL KEAFRVFDKD QNGFISAAEL RHVMTNLGEK LTDEEVDEMI KEADVDGDGQ
101: INYEEFVKVM MAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)