AT2G27030.2
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.999 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : calmodulin 5 | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
encodes a calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6. | ||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
calmodulin 5 (CAM5); FUNCTIONS IN: calcium ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 3 (TAIR:AT3G56800.1); Has 30900 Blast hits to 21220 proteins in 1706 species: Archae - 2; Bacteria - 104; Metazoa - 13572; Fungi - 6328; Plants - 6663; Viruses - 0; Other Eukaryotes - 4231 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:11532719..11533060 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 12869.00 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 3.94 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||||||
Length | 113 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MRSLGQNPTE AELQDMINEV DADGNGTIDF PEFLNLMARK MKDTDSEEEL KEAFRVFDKD QNGFISAAEL RHVMTNLGEK LTDEEVDEMI KEADVDGDGQ 101: INYEEFVKVM MAK |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)