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AT1G15270.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.966
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Translation machinery associated TMA7
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation machinery associated TMA7; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation machinery associated TMA7 (InterPro:IPR015157); BEST Arabidopsis thaliana protein match is: Translation machinery associated TMA7 (TAIR:AT3G16040.1); Has 377 Blast hits to 377 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 200; Fungi - 86; Plants - 64; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J6FKeggNOG:ENOG410ZRWXEMBL:AC007591EMBL:AF336925
EMBL:AY046003EMBL:AY062704EMBL:AY086188EMBL:AY093387
EMBL:CP002684EnsemblPlants:AT1G15270EnsemblPlants:AT1G15270.1entrez:838094
GeneID:838094GO:GO:0005886Gramene:AT1G15270.1hmmpanther:PTHR28632
HOGENOM:HOG000197071InterPro:IPR015157KEGG:ath:AT1G15270ncoils:Coil
OMA:DEDEMAFPfam:PF09072PIR:H86286Proteomes:UP000006548
RefSeq:NP_563969.1STRING:3702.AT1G15270.1TAIR:AT1G15270UniGene:At.11417
UniProt:Q9XI42
Coordinates (TAIR10) chr1:-:5250833..5252020
Molecular Weight (calculated) 6978.40 Da
IEP (calculated) 10.72
GRAVY (calculated) -1.52
Length 64 amino acids
Sequence (TAIR10)
(BLAST)
1: MSSKQGGKAK PLKQPKADKK EYDETDLANI QKKKDEEKAL KELRAKASQK GSFGGSGLKK SGKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)