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AT4G28060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cytochrome c oxidase, subunit Vib family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cytochrome c oxidase, subunit Vib family protein; FUNCTIONS IN: cytochrome-c oxidase activity; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit VIb (InterPro:IPR003213); BEST Arabidopsis thaliana protein match is: Cytochrome c oxidase, subunit Vib family protein (TAIR:AT5G57815.1); Has 578 Blast hits to 578 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 306; Fungi - 118; Plants - 134; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121WMeggNOG:KOG3057EMBL:AL035524EMBL:AL161572
EMBL:CP002687EnsemblPlants:AT4G28060EnsemblPlants:AT4G28060.1entrez:828921
Gene3D:1.10.10.140GeneID:828921GO:GO:0004129GO:GO:0005739
Gramene:AT4G28060.1gramene_pathway:1.9.3.1gramene_pathway:PWY-3781hmmpanther:PTHR11387
hmmpanther:PTHR11387:SF17HOGENOM:HOG000165128InParanoid:Q9SUD3InterPro:IPR003213
KEGG:ath:AT4G28060KO:K02267OMA:LDFHRCQPaxDb:Q9SUD3
Pfam:PF02297Pfam:Q9SUD3PIR:T02907PIRSF:PIRSF000278
PRO:PR:Q9SUD3ProteinModelPortal:Q9SUD3Proteomes:UP000006548RefSeq:NP_194535.2
SMR:Q9SUD3STRING:3702.AT4G28060.1SUPFAM:0045397SUPFAM:SSF47694
TAIR:AT4G28060UniGene:At.32053UniProt:Q9SUD3
Coordinates (TAIR10) chr4:-:13944018..13945602
Molecular Weight (calculated) 9252.71 Da
IEP (calculated) 5.14
GRAVY (calculated) -0.99
Length 78 amino acids
Sequence (TAIR10)
(BLAST)
1: MEDEIELKTA PADFRFPTTN QTRHCFTRYI EFHRCTTAKG EDANECERFA KYYRALCPGE WVDKWNEQRE TGTFPGPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)