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AT2G23530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc-finger domain of monoamine-oxidase A repressor R1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc-finger domain of monoamine-oxidase A repressor R1; CONTAINS InterPro DOMAIN/s: Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: Zinc-finger domain of monoamine-oxidase A repressor R1 (TAIR:AT4G37110.1); Has 512 Blast hits to 506 proteins in 112 species: Archae - 0; Bacteria - 4; Metazoa - 144; Fungi - 73; Plants - 256; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYXYeggNOG:ENOG410XQV7EMBL:CP002685EMBL:DQ446555
EnsemblPlants:AT2G23530EnsemblPlants:AT2G23530.1entrez:816885GeneID:816885
Gramene:AT2G23530.1hmmpanther:PTHR31169hmmpanther:PTHR31169:SF7HOGENOM:HOG000265482
InterPro:IPR018866KEGG:ath:AT2G23530OMA:QEHSCAHPfam:PF10497
PhylomeDB:Q1PF11Proteomes:UP000006548RefSeq:NP_179934.2STRING:3702.AT2G23530.1
TAIR:AT2G23530UniGene:At.49352UniProt:Q1PF11
Coordinates (TAIR10) chr2:-:10020652..10022804
Molecular Weight (calculated) 62249.10 Da
IEP (calculated) 5.83
GRAVY (calculated) -0.88
Length 552 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTMRTEAQD SVPKSNPNPE LIKETPKVSL YEQCREERIK ENLQRMNNLG LLNLSRKLKP KTRPVKRSYG NRNSVQNPTP PLQPSRRSSR LENTTPVIYT
101: DGINEKGKKA SKRESVVIGE GIRAEIYTEE HEKLLGNTER SWTCFVDGYD KNGKRIYDPF NGKTCHQCRQ KTMGHRTQCS ECNLVQGQFC GDCLFMRYGE
201: HVLEALENPD WICPACRGIC NCSLCRNNKG WVPTGPIYRR IAALGYKSVA HYLIQTKRAP TDDTTPSQAS AKRSLSFQEK IAGDEDVPML ENDDSLQKEE
301: GENTNEDQNG DLPEEVQKVQ NMECQSGGSL KKEEDETPNS ARRSLSFLLP SVEDDQTSLV DVQVLSCLVP PKQEHSCAHN GDDLPDIQER IGQHSNLETK
401: PDSYLLHVDE QIPLVDVQVL SYLETPKQEH SCAHIGDGLP KIQEWIGQDP TSETKPVSYL IPIDDDQTSL VDAQVMYLET PKQDKQEHSC AHIGDDLPEI
501: QQGTGQDSNL ETRLGESQTL VVKARVTRSK RKAALEPNPD SIGGRLRQRR RT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)