AT2G19260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/FYVE/PHD zinc finger superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, CW-type (InterPro:IPR011124), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: metalloendopeptidases;zinc ion binding;DNA binding (TAIR:AT5G35210.1); Has 1801 Blast hits to 1744 proteins in 174 species: Archae - 2; Bacteria - 8; Metazoa - 1171; Fungi - 140; Plants - 342; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:8357331..8359931 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71225.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.34 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.88 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 631 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLVESSFSSS VETSLLNVSE YQDPFAAYDW TSLAESYQMI HKVPEQSQVS FLKNVPVTDT MNLDESKHPK HQESCSEKSV MHKVSGKALT SLVYRRRKRT 101: LIPGGTEEHN LGKIRKQDDS LDDSIVSLYN PEESTKRKNR FNNCLVYSRK KRRGESSCTF TGETTIRGDG LDDAFVSEHD CGETRRRGNR SDDCLVYSRK 201: KGRVKFNSCS FSKHVTGRTK ISYDQADSSA CSQMGQIVKA DSSLTRPKPG EIKKSGHQLV YSQRKQLVKS NGSFTESHVG KTKRNGDRSE VLLTYSRRKK 301: SGKSIGVRVN GFLVYTRKKL KFRGPFARRD LSETKKNGDQ RSTVSSRELL DDTQVTEVTC SSDGTNDSCS SLKSSSEVNS TSSKSREDDC YSSDSGVSET 401: DTDGSSSPFR QCKHCDKPGT VEKMLICDEC EEAYHTRCCG VQMKDVAEID EWLCPSCLKN QSSKTKTKGR ISHERKWRVT VPFVIGIRIG KMFQADVPDW 501: SGPTMSDTSF VGEPLEIGQS EYMHDLKKAK NSKKQCSAVN WLQCREEDTN GVICGKWRRA PRSEVQTKDW ECFCCFSWDP SRADCAVPQE LETSEILKQL 601: KYIKMLRPRS DAKKRKLGPK GRSRSHIKGK S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)