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AT2G18260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.852
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : syntaxin of plants 112
Curator
Summary (TAIR10)
member of SYP11 Gene Family
Computational
Description (TAIR10)
syntaxin of plants 112 (SYP112); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, response to cold, cellular membrane fusion; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 111 (TAIR:AT1G08560.1); Has 1733 Blast hits to 1731 proteins in 229 species: Archae - 0; Bacteria - 19; Metazoa - 889; Fungi - 210; Plants - 409; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5074eggNOG:KOG0810EMBL:AC006439EMBL:CP002685
EMBL:DQ446518EnsemblPlants:AT2G18260EnsemblPlants:AT2G18260.1entrez:816342
GeneID:816342Genevisible:Q9ZPV9GO:GO:0000149GO:GO:0005634
GO:GO:0005886GO:GO:0006886GO:GO:0006887GO:GO:0006906
GO:GO:0009409GO:GO:0012505GO:GO:0016021GO:GO:0031201
GO:GO:0048278Gramene:AT2G18260.1hmmpanther:PTHR19957hmmpanther:PTHR19957:SF123
HOGENOM:HOG000238904InParanoid:Q9ZPV9InterPro:IPR000727InterPro:IPR006011
InterPro:IPR006012InterPro:IPR010989KEGG:ath:AT2G18260KO:K08486
ncoils:CoilOMA:EMVTNIDPaxDb:Q9ZPV9Pfam:PF00804
Pfam:PF05739Pfam:Q9ZPV9Pfscan:PS50192PhylomeDB:Q9ZPV9
PIR:C84562PRIDE:Q9ZPV9PRO:PR:Q9ZPV9PROSITE:PS00914
PROSITE:PS50192ProteinModelPortal:Q9ZPV9Proteomes:UP000006548RefSeq:NP_179418.2
scanprosite:PS00914SMART:SM00397SMART:SM00503SMR:Q9ZPV9
STRING:3702.AT2G18260.1SUPFAM:SSF47661TAIR:AT2G18260tair10-symbols:ATSYP112
tair10-symbols:SYP112TMHMM:TMhelixUniGene:At.52801UniProt:Q9ZPV9
Coordinates (TAIR10) chr2:+:7942275..7943192
Molecular Weight (calculated) 35044.90 Da
IEP (calculated) 6.39
GRAVY (calculated) -0.52
Length 305 amino acids
Sequence (TAIR10)
(BLAST)
001: MNDLMTKSFL SYVELKKQAR TDMESDRDLE KGEDFNFDFS PADEENLSGF FQEIETIKTL IEEITHLLLD LQNLNEETKS THSTKILRGL RDRMESNIVT
101: ISRKANTVKT LIETLEKRNV ANRTSFKEGS CVDRTRTSIT NGVRKKLRDT MSEFHRLRER IFADYREDLK RKYFLATGEE PSNEDMEKMI SGSGSCSDLV
201: KTFEVKPEMD LKTKERHEAV NDIKRSLNRL HQVFLDMAVL VETQGDRIDD IEANVANAGS FVSGGTNSLY YANQMKKKTK SWVLWVSILG VLILLVCVIS
301: MLASR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)