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AT1G53690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA directed RNA polymerase, 7 kDa subunit
Curator
Summary (TAIR10)
Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.
Computational
Description (TAIR10)
DNA directed RNA polymerase, 7 kDa subunit; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: pollen tube growth, transcription; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, sperm cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: RNA polymerase Rbp10 (InterPro:IPR006591); BEST Arabidopsis thaliana protein match is: DNA directed RNA polymerase, 7 kDa subunit (TAIR:AT5G41010.1); Has 279 Blast hits to 279 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 54; Plants - 68; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1996eggNOG:KOG3507EMBL:AC024260EMBL:CP002684
EnsemblPlants:AT1G53690EnsemblPlants:AT1G53690.1entrez:841806Gene3D:2.20.28.30
GeneID:841806Genevisible:Q9C8M4GO:GO:0003677GO:GO:0003899
GO:GO:0005634GO:GO:0006351GO:GO:0009860GO:GO:0046872
Gramene:AT1G53690.1hmmpanther:PTHR12056HOGENOM:HOG000191755InParanoid:Q9C8M4
InterPro:IPR006591InterPro:IPR029040KEGG:ath:AT1G53690KO:K03009
PaxDb:Q9C8M4Pfam:PF03604Pfam:Q9C8M4PhylomeDB:Q9C8M4
PIR:B96577PRO:PR:Q9C8M4ProteinModelPortal:Q9C8M4Proteomes:UP000006548
Reactome:R-ATH-112382Reactome:R-ATH-113418Reactome:R-ATH-1834949Reactome:R-ATH-674695
Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210Reactome:R-ATH-72086
Reactome:R-ATH-72163Reactome:R-ATH-72165Reactome:R-ATH-72203Reactome:R-ATH-73776
Reactome:R-ATH-73779Reactome:R-ATH-75953Reactome:R-ATH-76042Reactome:R-ATH-77075
RefSeq:NP_175773.1SMART:SM00659SMR:Q9C8M4STRING:3702.AT1G53690.1
SUPFAM:SSF63393TAIR:AT1G53690UniGene:At.52185UniProt:Q9C8M4
Coordinates (TAIR10) chr1:-:20042699..20043344
Molecular Weight (calculated) 7137.62 Da
IEP (calculated) 6.43
GRAVY (calculated) -0.68
Length 61 amino acids
Sequence (TAIR10)
(BLAST)
1: MDLQQSETDD KQPEQLVIYV CGDCGQENIL KRGDVFQCRD CGFRILYKKR ILDKKETRIG V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)