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AT1G32780.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.984
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GroES-like zinc-binding dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GroES-like zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding dehydrogenase family protein (TAIR:AT1G64710.1); Has 32235 Blast hits to 32213 proteins in 3118 species: Archae - 738; Bacteria - 20422; Metazoa - 1293; Fungi - 2369; Plants - 4116; Viruses - 3; Other Eukaryotes - 3294 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G32780-MONOMEREC:1.1.1.1eggNOG:COG1062eggNOG:KOG0022
EMBL:AC017118EMBL:AY087044EMBL:BT029769EMBL:CP002684
EnsemblPlants:AT1G32780EnsemblPlants:AT1G32780.1entrez:840172Gene3D:3.40.50.720
Gene3D:3.90.180.10GeneID:840172Genevisible:A1L4Y2GO:GO:0004022
GO:GO:0005737GO:GO:0008270Gramene:AT1G32780.1gramene_pathway:1.1.1.1
gramene_pathway:1.1.1.22gramene_pathway:ETOH-ACETYLCOA-ANA-PWYgramene_pathway:PWY-3801gramene_pathway:PWY-3821
gramene_pathway:PWY-4821gramene_pathway:PWY-5486gramene_pathway:PWY-6333gramene_pathway:PWY66-21
hmmpanther:PTHR11695hmmpanther:PTHR11695:SF395HOGENOM:HOG000294674InParanoid:A1L4Y2
InterPro:IPR002085InterPro:IPR002328InterPro:IPR011032InterPro:IPR013149
InterPro:IPR013154InterPro:IPR016040KEGG:ath:AT1G32780KO:K00001
OMA:CAVPIPDPANTHER:PTHR11695PaxDb:A1L4Y2Pfam:A1L4Y2
Pfam:PF00107Pfam:PF08240PhylomeDB:A1L4Y2PRIDE:A1L4Y2
PRO:PR:A1L4Y2PROSITE:PS00059ProteinModelPortal:A1L4Y2Proteomes:UP000006548
RefSeq:NP_564409.1scanprosite:PS00059SMR:A1L4Y2STRING:3702.AT1G32780.1
SUPFAM:SSF50129SUPFAM:SSF51735TAIR:AT1G32780UniGene:At.40067
UniProt:A1L4Y2
Coordinates (TAIR10) chr1:-:11869977..11872595
Molecular Weight (calculated) 42910.00 Da
IEP (calculated) 8.11
GRAVY (calculated) -0.11
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: MAETQGKVIT CKAAVVWGPK VPLVIQEICV DPPQKMEVRV KILYSSICHT DLGCWNGTNE AERAFPRILG HEAVGIVESV GEGVKDVKEG DYVIPTFNGE
101: CGECKVCKRE ESNLCERYHV DPMKRVMVND GGTRFSTTIN KDGGSSQSQP IYHFLNTSTF TEYTVLDSAC VVKIDPNSPL KQMSLLSCGV STGVGAAWNI
201: ANVKEGKSTA VFGLGSVGLA VAEGARARGA SRIIGVDANA SKFEKGKLMG VTDFINPKDL TKPVHQMIRE ITGGGVDYSF ECTGNVDVLR EAFLSTHVGW
301: GSTVLVGIYP TPRTLPLHPM ELFDGRRITG SVFGGFKPKS QLPNFAQQCM KGVVKLEPFI TNELPFEKIN DAFQLLRDGK SLRCILQISK LLKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)