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AT5G36910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : thionin 2.2
Curator
Summary (TAIR10)
Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.
Computational
Description (TAIR10)
thionin 2.2 (THI2.2); FUNCTIONS IN: toxin receptor binding; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Thionin (InterPro:IPR001010); BEST Arabidopsis thaliana protein match is: Plant thionin (TAIR:AT1G66100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JGG2eggNOG:ENOG410YY3SEMBL:AB016877EMBL:AY085455
EMBL:CP002688EMBL:L41245EnsemblPlants:AT5G36910EnsemblPlants:AT5G36910.1
entrez:833659ExpressionAtlas:A6QRC1ExpressionAtlas:Q42597Gene3D:3.30.1350.10
GeneID:833659Genevisible:Q42597GO:GO:0005576GO:GO:0006952
Gramene:AT5G36910.1hmmpanther:PTHR33920hmmpanther:PTHR33920:SF1HOGENOM:HOG000241884
InParanoid:Q42597InterPro:IPR001010KEGG:ath:AT5G36910OMA:RCKLTSG
PaxDb:A6QRC1PaxDb:Q42597Pfam:PF00321Pfam:Q42597
PhylomeDB:Q42597PRO:PR:Q42597PROSITE:PS00271ProteinModelPortal:Q42597
Proteomes:UP000006548RefSeq:NP_198507.1scanprosite:PS00271SMR:Q42597
STRING:3702.AT5G36910.1SUPFAM:SSF57429TAIR:AT5G36910tair10-symbols:THI2.2
UniGene:At.9367UniProt:A6QRC1UniProt:Q42597
Coordinates (TAIR10) chr5:-:14562053..14562673
Molecular Weight (calculated) 14179.10 Da
IEP (calculated) 6.23
GRAVY (calculated) 0.22
Length 134 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGKTVISSL LIMSLVLAQI QVEAKICCPT KDDRSVYFVC MLSVSSQFYC LLKSKCKNTS QTICPPGYTN DILENSGDAV NEYCKLGCAS SVCGALTTLQ
101: NFDTSKVLSE AVEQCTKACS SVCTGGSTAA VKSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)