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AT2G27385.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pollen Ole e 1 allergen and extensin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT5G22430.1); Has 33 Blast hits to 33 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J39EeggNOG:ENOG410ZEJBEMBL:CP002685EnsemblPlants:AT2G27385
EnsemblPlants:AT2G27385.1entrez:817283ExpressionAtlas:F4IFT4GeneID:817283
Gramene:AT2G27385.1hmmpanther:PTHR33083hmmpanther:PTHR33083:SF5InParanoid:F4IFT4
OMA:IESNCEAPaxDb:F4IFT4Pfam:PF01190PRIDE:F4IFT4
Proteomes:UP000006548RefSeq:NP_850100.2TAIR:AT2G27385UniGene:At.22188
UniProt:F4IFT4
Coordinates (TAIR10) chr2:-:11716697..11717318
Molecular Weight (calculated) 18821.50 Da
IEP (calculated) 8.03
GRAVY (calculated) 0.12
Length 173 amino acids
Sequence (TAIR10)
(BLAST)
001: MYSSSDLCFF PMALRSHFLA VFLFSATLSS CLVVSASLVE GKVSCFDCPN DYDYSGITVG VSCSHTNTRF TVTTDKKGDF ISELPSKIES NCEAELQGSV
101: KQLYASKNNV KSKIVKLGGD KYGLSSKLFF LKSCPRSFGS FSSSKTVDLP VPPEWGLAPT SYYVPFLPII GIP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)