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AT1G34580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.980
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter 1 (TAIR:AT1G11260.1); Has 27155 Blast hits to 26691 proteins in 1939 species: Archae - 431; Bacteria - 12164; Metazoa - 3885; Fungi - 6882; Plants - 2524; Viruses - 0; Other Eukaryotes - 1269 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNQKeggNOG:KOG0254EMBL:AC023279EMBL:AJ344335
EMBL:AK118511EMBL:BT005898EMBL:CP002684EnsemblPlants:AT1G34580
EnsemblPlants:AT1G34580.1entrez:840362GeneID:840362Genevisible:Q93Y91
GO:GO:0008643GO:GO:0015293GO:GO:0016021GO:GO:0022891
Gramene:AT1G34580.1hmmpanther:PTHR23500hmmpanther:PTHR23500:SF44HOGENOM:HOG000202867
InParanoid:Q93Y91InterPro:IPR003663InterPro:IPR005828InterPro:IPR005829
InterPro:IPR020846KEGG:ath:AT1G34580OMA:VSANCINPaxDb:Q93Y91
Pfam:PF00083Pfam:Q93Y91Pfscan:PS50850PhylomeDB:Q93Y91
PIR:F86469PRIDE:Q93Y91PRINTS:PR00171PRO:PR:Q93Y91
PROSITE:PS00217PROSITE:PS50850ProteinModelPortal:Q93Y91Proteomes:UP000006548
RefSeq:NP_174718.1scanprosite:PS00217SMR:Q93Y91STRING:3702.AT1G34580.1
SUPFAM:SSF103473TAIR:AT1G34580TIGRfam:TIGR00879TIGRFAMs:TIGR00879
TMHMM:TMhelixUniGene:At.15065UniProt:Q93Y91
Coordinates (TAIR10) chr1:+:12660631..12663553
Molecular Weight (calculated) 54371.20 Da
IEP (calculated) 9.28
GRAVY (calculated) 0.68
Length 506 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGGGLALDV SSAGNIDAKI TAAVVMSCIV AASCGLIFGY DIGISGGVTT MKPFLEKFFP SVLKKASEAK TNVYCVYDSQ LLTAFTSSLY VAGLVASLVA
101: SRLTAAYGRR TTMILGGFTF LFGALINGLA ANIAMLISGR ILLGFGVGFT NQAAPVYLSE VAPPRWRGAF NIGFSCFISM GVVAANLINY GTDSHRNGWR
201: ISLGLAAVPA AIMTVGCLFI SDTPSSLLAR GKHDEAHTSL LKLRGVENIA DVETELAELV RSSQLAIEAR AELFMKTILQ RRYRPHLVVA VVIPCFQQLT
301: GITVNAFYAP VLFRSVGFGS GPALIATFIL GFVNLGSLLL STMVIDRFGR RFLFIAGGIL MLLCQIAVAV LLAVTVGATG DGEMKKGYAV TVVVLLCIYA
401: AGFGWSWGPL SWLVPSEIFP LKIRPAGQSL SVAVNFAATF ALSQTFLATL CDFKYGAFLF YGGWIFTMTI FVIMFLPETK GIPVDSMYQV WEKHWYWQRF
501: TKPTST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)