AT1G34580.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.980 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter 1 (TAIR:AT1G11260.1); Has 27155 Blast hits to 26691 proteins in 1939 species: Archae - 431; Bacteria - 12164; Metazoa - 3885; Fungi - 6882; Plants - 2524; Viruses - 0; Other Eukaryotes - 1269 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:12660631..12663553 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 54371.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.68 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 506 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAGGGLALDV SSAGNIDAKI TAAVVMSCIV AASCGLIFGY DIGISGGVTT MKPFLEKFFP SVLKKASEAK TNVYCVYDSQ LLTAFTSSLY VAGLVASLVA 101: SRLTAAYGRR TTMILGGFTF LFGALINGLA ANIAMLISGR ILLGFGVGFT NQAAPVYLSE VAPPRWRGAF NIGFSCFISM GVVAANLINY GTDSHRNGWR 201: ISLGLAAVPA AIMTVGCLFI SDTPSSLLAR GKHDEAHTSL LKLRGVENIA DVETELAELV RSSQLAIEAR AELFMKTILQ RRYRPHLVVA VVIPCFQQLT 301: GITVNAFYAP VLFRSVGFGS GPALIATFIL GFVNLGSLLL STMVIDRFGR RFLFIAGGIL MLLCQIAVAV LLAVTVGATG DGEMKKGYAV TVVVLLCIYA 401: AGFGWSWGPL SWLVPSEIFP LKIRPAGQSL SVAVNFAATF ALSQTFLATL CDFKYGAFLF YGGWIFTMTI FVIMFLPETK GIPVDSMYQV WEKHWYWQRF 501: TKPTST |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)