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AT3G28770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1216)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1216); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, epidermis; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28810.1); Has 852843 Blast hits to 124903 proteins in 3296 species: Archae - 3984; Bacteria - 158225; Metazoa - 281358; Fungi - 79908; Plants - 38733; Viruses - 3887; Other Eukaryotes - 286748 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JU4YeggNOG:ENOG411077EEMBL:AP002057EMBL:CP002686
EnsemblPlants:AT3G28770EnsemblPlants:AT3G28770.1entrez:822509GeneID:822509
Gramene:AT3G28770.1hmmpanther:PTHR31607InterPro:IPR009605KEGG:ath:AT3G28770
ncoils:CoilOMA:SKNEILMPfam:PF06746Proteomes:UP000006548
RefSeq:NP_189519.1TAIR:AT3G28770TMHMM:TMhelixUniGene:At.42736
UniProt:Q9LH98
Coordinates (TAIR10) chr3:+:10796716..10803237
Molecular Weight (calculated) 232864.00 Da
IEP (calculated) 4.73
GRAVY (calculated) -1.66
Length 2081 amino acids
Sequence (TAIR10)
(BLAST)
0001: MRKVYLFFVC CIVATSLTLN VVLAHETVVN PPNTIKDIEP YISDRALGFV LKLENNCPIR EQLRSFFEKL KDLLKLESSV TPLIEDNEPK TFKFDLKSKS
0101: ENLLQTMFML GRGLLSSSIR KEMFEVMKSL TELHAAIGRV IIEKHIKGDE AMSLSLEQKN AVETSITQWE QTITRIVKIV VEVKSKSSSE ASSEESSSTE
0201: HNNVTTGSNM VETNGENSES TQEKGDGVEG SNGGDVSMEN LQGNKVEDLK EGNNVVENGE TKENNGENVE SNNEKEVEGQ GESIGDSAIE KNLESKEDVK
0301: SEVEAAKNDG SSMTENLGEA QGNNGVSTID NEKEVEGQGE SIEDSDIEKN LESKEDVKSE VEAAKNAGSS MTGKLEEAQR NNGVSTNETM NSENKGSGES
0401: TNDKMVNATT NDEDHKKENK EETHENNGES VKGENLENKA GNEESMKGEN LENKVGNEEL KGNASVEAKT NNESSKEEKR EESQRSNEVY MNKETTKGEN
0501: VNIQGESIGD STKDNSLENK EDVKPKVDAN ESDGNSTKER HQEAQVNNGV STEDKNLDNI GADEQKKNDK SVEVTTNDGD HTKEKREETQ GNNGESVKNE
0601: NLENKEDKKE LKDDESVGAK TNNETSLEEK REQTQKGHDN SINSKIVDNK GGNADSNKEK EVHVGDSTND NNMESKEDTK SEVEVKKNDG SSEKGEEGKE
0701: NNKDSMEDKK LENKESQTDS KDDKSVDDKQ EEAQIYGGES KDDKSVEAKG KKKESKENKK TKTNENRVRN KEENVQGNKK ESEKVEKGEK KESKDAKSVE
0801: TKDNKKLSST ENRDEAKERS GEDNKEDKEE SKDYQSVEAK EKNENGGVDT NVGNKEDSKD LKDDRSVEVK ANKEESMKKK REEVQRNDKS STKEVRDFAN
0901: NMDIDVQKGS GESVKYKKDE KKEGNKEENK DTINTSSKQK GKDKKKKKKE SKNSNMKKKE EDKKEYVNNE LKKQEDNKKE TTKSENSKLK EENKDNKEKK
1001: ESEDSASKNR EKKEYEEKKS KTKEEAKKEK KKSQDKKREE KDSEERKSKK EKEESRDLKA KKKEEETKEK KESENHKSKK KEDKKEHEDN KSMKKEEDKK
1101: EKKKHEESKS RKKEEDKKDM EKLEDQNSNK KKEDKNEKKK SQHVKLVKKE SDKKEKKENE EKSETKEIES SKSQKNEVDK KEKKSSKDQQ KKKEKEMKES
1201: EEKKLKKNEE DRKKQTSVEE NKKQKETKKE KNKPKDDKKN TTKQSGGKKE SMESESKEAE NQQKSQATTQ ADSDESKNEI LMQADSQADS HSDSQADSDE
1301: SKNEILMQAD SQATTQRNNE EDRKKQTSVA ENKKQKETKE EKNKPKDDKK NTTKQSGGKK ESMESESKEA ENQQKSQATT QADSDESKNE ILMQADSQAD
1401: SHSDSQADSD ESKNEILMQA DSQATTQRNN EEDRKKQTSV AENKKQKETK EEKNKPKDDK KNTTEQSGGK KESMESESKE AENQQKSQAT TQGESDESKN
1501: EILMQADSQA DTHANSQGDS DESKNEILMQ ADSQADSQTD SDESKNEILM QADSQADSQT DSDESKNEIL MQADSQAKIG ESLEDNKVKG KEDNGDEVGK
1601: ENSKTIEVKG RHEESKDGKT NENGGKEVST EEGSKDSNIV ERNGGKEDSI KEGSEDGKTV EINGGEELST EEGSKDGKIE EGKEGKENST KEGSKDDKIE
1701: EGMEGKENST KESSKDGKIN EIHGDKEATM EEGSKDGGTN STGKDSKDSK SVEINGVKDD SLKDDSKNGD INEINNGKED SVKDNVTEIQ GNDNSLTNST
1801: SSEPNGDKLD TNKDSMKNNT MEAQGGSNGD STNGETEETK ESNVSMNNQN MQDVGSNENS MNNQTTGTGD DIISTTTDTE SNTSKEVTSF ISNLEEKSPG
1901: TQEFQSFFQK LKDYMKYLCP VSSTFEAKDS RSYMSEMISM ATKLSDAMAV LQAKKSGSGQ MKTTLQGYQQ EVMKTLTILQ SVMGKAVTEQ QSKDSGSLTL
2001: TLSQQQAIKE IVLKWEQVMS QFVKIATESE KQFSLEISTE NGYHMKKSYN SSSSSSSSSS SSSRSDLKLN GEHLKGMGMN G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)