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AT1G18990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.952
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF593
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF593; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT1G74830.1); Has 1377 Blast hits to 1217 proteins in 215 species: Archae - 6; Bacteria - 79; Metazoa - 450; Fungi - 121; Plants - 429; Viruses - 14; Other Eukaryotes - 278 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ISG7eggNOG:ENOG410ZKWFEMBL:AC068602EMBL:BT002932
EMBL:CP002684EnsemblPlants:AT1G18990EnsemblPlants:AT1G18990.1entrez:838480
GeneID:838480Genevisible:Q9LMC8GO:GO:0016021Gramene:AT1G18990.1
hmmpanther:PTHR31448hmmpanther:PTHR31448:SF9HOGENOM:HOG000090959InterPro:IPR007656
KEGG:ath:AT1G18990ncoils:CoilOMA:ISESNDVPaxDb:Q9LMC8
Pfam:PF04576Pfam:Q9LMC8PhylomeDB:Q9LMC8PRIDE:Q9LMC8
PRO:PR:Q9LMC8PROSITE:PS51775ProteinModelPortal:Q9LMC8Proteomes:UP000006548
RefSeq:NP_173333.1TAIR:AT1G18990TMHMM:TMhelixUniGene:At.41768
UniProt:Q9LMC8
Coordinates (TAIR10) chr1:-:6558778..6560432
Molecular Weight (calculated) 59881.00 Da
IEP (calculated) 4.48
GRAVY (calculated) -0.49
Length 524 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNRSFKNFI EEELGTFPQF LIYALLEWIL IIILFIDGFL AFFSNQIAKF FDLKIPCLLC TRLDHVLVSR NPDFYYNDSI CDAHKKNVSS LAYCHVHKKL
101: SEIKRMCEGC LLSFATEKET DVDTYKSLIG ILHKDLELLI DDERELQLAF PVAGSKKDEN FYQVENRTNN SNDRFQRQQR CSCCGQIMKL KSDKPKSNNQ
201: SFFGAPSPSP RVSFNQRTLD LSNIKYTDLP EDDDALNTKG ASLDAVDDRT PSFVKGGNKF FGIPLSDSAQ NSPRWSVRSM KKSFVDQNGL ESEVLDGDSI
301: LQHLNRQVRL DRKSLMDLYM ELDEERSASA VAANNAMAMI TRLQAEKAAV QMEALQYQRM MDEQAEYDQE ALQSMNGLLV KREEEMKELE AGIEVYRLRY
401: GLLREERGEA EEFLDEETKP VSDLPVCSSN HEEDLEQMKD SAEDSIGNNG VMIIEEEKEN GSRKDMLVKE ISEITERLNA IESKGELLQQ ISDVLDVSEG
501: EAILLQISQN LHMLRSFIEM PTES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)