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AT2G05760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.469
plasma membrane 0.358
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Xanthine/uracil permease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: Xanthine/uracil permease family protein (TAIR:AT2G34190.1); Has 8976 Blast hits to 8949 proteins in 1902 species: Archae - 67; Bacteria - 7337; Metazoa - 353; Fungi - 128; Plants - 443; Viruses - 1; Other Eukaryotes - 647 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1708-MONOMEReggNOG:COG2233eggNOG:KOG1292EMBL:AC007233
EMBL:BT023436EMBL:CP002685EnsemblPlants:AT2G05760EnsemblPlants:AT2G05760.1
entrez:815127GeneID:815127Genevisible:Q9SHZ3GO:GO:0005215
GO:GO:0009506GO:GO:0016021GO:GO:0055085Gramene:AT2G05760.1
hmmpanther:PTHR11119hmmpanther:PTHR11119:SF46HOGENOM:HOG000038202InParanoid:Q9SHZ3
InterPro:IPR006043InterPro:IPR029948KEGG:ath:AT2G05760OMA:QTWGIAT
PANTHER:PTHR11119PANTHER:PTHR11119:SF46PaxDb:Q9SHZ3Pfam:PF00860
Pfam:Q9SHZ3PhylomeDB:Q9SHZ3PIR:D84471PRIDE:Q9SHZ3
PRO:PR:Q9SHZ3ProteinModelPortal:Q9SHZ3Proteomes:UP000006548Reactome:R-ATH-196836
RefSeq:NP_178636.1SMR:Q9SHZ3STRING:3702.AT2G05760.1TAIR:AT2G05760
TMHMM:TMhelixUniGene:At.14537UniProt:Q9SHZ3
Coordinates (TAIR10) chr2:+:2180978..2183710
Molecular Weight (calculated) 57134.60 Da
IEP (calculated) 9.50
GRAVY (calculated) 0.50
Length 520 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEISHPPME QLQDLEYCID SNPPWPETVL LAFQNYILML GTSAFIPALL VPAMGGSDGD RARVIQTLLF VAGIKTLLQA LFGTRLPAVV GGSLAYVVPI
101: AYIINDSSLQ KISNDHERFI HTMRAIQGAL IVASSIQIIL GYSQVWGLFS RFFSPLGMAP VVGLVGLGMF QRGFPQLGNC IEIGLPMLLL VIGLTQYLKH
201: VRPFKDVPIF ERFPILICVT IVWIYAVILT ASGAYRGKPS LTQHSCRTDK ANLISTAPWF KFPYPLQWGP PTFSVGHSFA MMSAVLVSMV ESTGAYIAAS
301: RLAIATPPPA YVLSRGIGWQ GIGVLLDGLF GTGTGSTVLV ENVGLLGLTR VGSRRVVQVS AGFMIVFSTL GKFGAVFASI PVPIYAALHC ILFGLVAAVG
401: LSFLQFTNMN SMRNLMITGL SLFLGISIPQ FFAQYWDARH YGLVHTNAGW FNAFLNTLFM SPATVGLIIA VFMDNTMEVE RSKKDRGMPW WVKFRTFRGD
501: NRNEEFYTLP FNLNRFFPPT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)