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AT2G04650.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.944
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ADP-glucose pyrophosphorylase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ADP-glucose pyrophosphorylase family protein; FUNCTIONS IN: transferase activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: ADP-glucose pyrophosphorylase family protein (TAIR:AT1G74910.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1208eggNOG:KOG1460EMBL:CP002685EnsemblPlants:AT2G04650
EnsemblPlants:AT2G04650.1entrez:815007Gene3D:3.90.550.10GeneID:815007
GO:GO:0009058GO:GO:0016779GO:GO:2000082Gramene:AT2G04650.1
hmmpanther:PTHR22572hmmpanther:PTHR22572:SF104InParanoid:F4IFA4InterPro:IPR001451
InterPro:IPR005835InterPro:IPR029044iPTMnet:F4IFA4KEGG:ath:AT2G04650
OMA:FCNGNGNPaxDb:F4IFA4Pfam:PF00132Pfam:PF00483
PRIDE:F4IFA4ProteinModelPortal:F4IFA4Proteomes:UP000006548RefSeq:NP_178542.2
SMR:F4IFA4STRING:3702.AT2G04650.1SUPFAM:SSF53448TAIR:AT2G04650
UniGene:At.27314UniProt:F4IFA4
Coordinates (TAIR10) chr2:-:1621986..1624486
Molecular Weight (calculated) 44940.10 Da
IEP (calculated) 6.60
GRAVY (calculated) -0.04
Length 406 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEEKVVAVI MVGGPTKGTR FRPLSFNTPK PLIPLAGQPM IHHPISACKK ISNLAQIFLI GFYEEREFAL YVSSISNELK IPVRYLKEDK PHGSAGALYY
101: FRDRIMEEKP SHVFLLNCDV CCSFPLQGIL DAHRRYGGIG TMLVIKVSAE AASQFGELIA DPDTKELLHY TEKPETFVSD LINCGVYVFT SDIFNAIEEV
201: YSQIRDTSSN YQSATRSVPA DFVRLDQDIL SPLAGKKQLY TYENKDFWEQ IKTPGKSLKC SALYLSQFRE TSPHILASGD GTNRKPTIIG DVYIHPSVKL
301: HPTAKIGPNV SISANVRVGP GVRLISCIIL DDVEIKENAV VINSIIGWKS SIGRWSRVQA SGDYNDRLGI TILGEAVTVE DEVAVIGSIV LQNKTLNVSV
401: QDDIIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)