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AT1G78915.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23851315 (2013): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 854 Blast hits to 777 proteins in 206 species: Archae - 104; Bacteria - 466; Metazoa - 6; Fungi - 10; Plants - 101; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).
Protein Annotations
EMBL:AK118621EMBL:BT008318EMBL:CP002684EnsemblPlants:AT1G78915
EnsemblPlants:AT1G78915.1entrez:844230ExpressionAtlas:Q8GWV1Gene3D:1.25.40.10
GeneID:844230GO:GO:0016021Gramene:AT1G78915.1hmmpanther:PTHR26312
hmmpanther:PTHR26312:SF0HOGENOM:HOG000006211InterPro:IPR011990InterPro:IPR013026
InterPro:IPR019734ncoils:CoilPfam:PF13181Pfscan:PS50005
Pfscan:PS50293PhylomeDB:Q8GWV1PROSITE:PS50005PROSITE:PS50293
Proteomes:UP000006548RefSeq:NP_683507.1SMART:SM00028SUPFAM:SSF48452
TAIR:AT1G78915TMHMM:TMhelixUniGene:At.45151UniProt:Q8GWV1
Coordinates (TAIR10) chr1:-:29667729..29671081
Molecular Weight (calculated) 42581.60 Da
IEP (calculated) 8.33
GRAVY (calculated) -0.46
Length 385 amino acids
Sequence (TAIR10)
(BLAST)
001: MLMTLAATTS VSFNSKLLLF RIRCSDSNPK RGFGSKKEEK DPALQQRKSS SKQSVSVPRK APGLNTQFEG KSGRSFDIDF DERLENIRRS ALEQKKTEVV
101: KEFGPIDYDA PVKSDQKTIG LGTKVGVGIA VVVFGLVFAL GDFLPTGSDS PTKNTTVVKN QISEEEKATL QQRLKEFETT LNGTPQDQAA LEGAAVTLTE
201: LGDYSRAAAF LEKLAKERPT DPDVFRLLGE VNYELNNYEG SIAAYKISEK VSKGIDLEVT RGLMNAYLAA KKPDEAVKFL LDTRERLNTK KTSTTDSVTD
301: ETNLDPIQVE LLLGKAYSDW GHISDAIAVY DQLISAHPED FRGYLAKGII LRENGSRGDA ERMFIQARFF APNKAKALVD RYSKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)