suba logo
AT1G78730.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.942
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G69630.1); Has 1701 Blast hits to 1666 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 2; Plants - 1695; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JIGWeggNOG:ENOG410Z85FEMBL:AC005679EMBL:AK227293
EMBL:CP002684EnsemblPlants:AT1G78730EnsemblPlants:AT1G78730.1entrez:844209
Gene3D:3.80.10.10GeneID:844209hmmpanther:PTHR32212hmmpanther:PTHR32212:SF126
HOGENOM:HOG000015216InParanoid:Q9ZV91InterPro:IPR001810InterPro:IPR006566
InterPro:IPR013101InterPro:IPR032675KEGG:ath:AT1G78730OMA:RWINTVI
PaxDb:Q9ZV91Pfam:PF00646Pfam:PF07723Pfam:PF08387
Pfam:Q9ZV91PIR:C96816PRIDE:Q9ZV91PRO:PR:Q9ZV91
ProteinModelPortal:Q9ZV91Proteomes:UP000006548RefSeq:NP_177994.2SMART:SM00256
SMART:SM00579STRING:3702.AT1G78730.1SUPFAM:SSF52047SUPFAM:SSF81383
TAIR:AT1G78730UniGene:At.43865UniProt:Q9ZV91
Coordinates (TAIR10) chr1:-:29607840..29609441
Molecular Weight (calculated) 48282.30 Da
IEP (calculated) 5.74
GRAVY (calculated) -0.15
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEDAESRVS STRSYDRRGH LDWLRKLPDS LLCQVFLNLP TKDVVKTSVL SSTWGNIWRS VPGLDLGYGD FPEYNAFVSF VDSFLGFNSE SRLQNFKLNY
101: QYLRLKYEWK WTELDNANVT RWINTVIKRK VEHLHLSDVT FSNPESVSLP CVKVMYLDMV KFANDLAFEM LISGCPVLES LTIKRSACDN VDYLRVCSQS
201: LLSFTLVGHC NEDMVKEQVV AIDAPRLEDL KLYCHETASF IIKNPASLVK MDIDIMFNLS SEQKFDPNDL PKRNMIRNFL LGISGVKEME ISSHTLEVIY
301: NYSRCERLPV FRNLSSLHAD FDDYRWEMLP GFSKTPGEEP ISILPGPQCN LPALEFVDIL KPMVEKETEL KLMSYFLEKS TILKKLTLRL GDFRGNEESA
401: LLKKLLTIPR LSSSCQVVVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)