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AT1G78180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:30962257 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mitochondrial substrate carrier family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT5G64970.1); Has 23010 Blast hits to 13205 proteins in 452 species: Archae - 0; Bacteria - 0; Metazoa - 9903; Fungi - 6601; Plants - 4239; Viruses - 0; Other Eukaryotes - 2267 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZRF1eggNOG:KOG0752EMBL:AC012680EMBL:AK176097
EMBL:AK176129EMBL:CP002684EnsemblPlants:AT1G78180EnsemblPlants:AT1G78180.1
entrez:844154Gene3D:1.50.40.10GeneID:844154Genevisible:Q9C9R4
GO:GO:0005743GO:GO:0009941GO:GO:0016021GO:GO:0055085
Gramene:AT1G78180.1hmmpanther:PTHR24089hmmpanther:PTHR24089:SF292HOGENOM:HOG000165726
InParanoid:Q9C9R4InterPro:IPR002067InterPro:IPR018108InterPro:IPR023395
KEGG:ath:AT1G78180OMA:CTEVATYPaxDb:Q9C9R4Pfam:PF00153
Pfam:Q9C9R4Pfscan:PS50920PhylomeDB:Q9C9R4PIR:B96811
PRIDE:Q9C9R4PRINTS:PR00926PRO:PR:Q9C9R4PROSITE:PS50920
ProteinModelPortal:Q9C9R4Proteomes:UP000006548RefSeq:NP_565171.4SMR:Q9C9R4
STRING:3702.AT1G78180.1SUPFAM:0048588SUPFAM:SSF103506TAIR:AT1G78180
UniGene:At.34324UniGene:At.66859UniProt:Q9C9R4
Coordinates (TAIR10) chr1:+:29416919..29418525
Molecular Weight (calculated) 45824.80 Da
IEP (calculated) 10.10
GRAVY (calculated) -0.04
Length 418 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGLDIYPHD PSSSSSTSSI DLSNEAFFST GGLFLEPPGV SSSFFDSISS KCSDSEPLHF PGYWRNKTRL RSGKNFMFLS VSLSKDRSEQ QCKKALAQND
101: EIPGKDNRKR SVIGGVRRRG TMNTRKHLWA GAVAAMVSKT FLAPLERLKL EYTVRGEQRN LLVVAKSIAT TQGLTGFWKG NLLNVLRTAP FKAVNFCAYD
201: TYRKQLLKIA GNQEATNFER FVAGAAAGIT ATVLCLPLDT IRTKLVARGG EALGGIGGAF RYMIQTEGLF SLYKGLVPSI ASMALSGAVF YGVYDILKSS
301: FLHTPEGRKR LIDMKQQGQE LNALDRLELG PIRTLMYGAI AGACTEVATY PFEVVRRQLQ MQMGKNKLNA LAMGFNIIER GGIPALYAGL LPSLLQVLPS
401: ASISYFVYEC MKIVLKVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)