AT1G78180.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Mitochondrial substrate carrier family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT5G64970.1); Has 23010 Blast hits to 13205 proteins in 452 species: Archae - 0; Bacteria - 0; Metazoa - 9903; Fungi - 6601; Plants - 4239; Viruses - 0; Other Eukaryotes - 2267 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:29416919..29418525 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 45824.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.10 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 418 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSGLDIYPHD PSSSSSTSSI DLSNEAFFST GGLFLEPPGV SSSFFDSISS KCSDSEPLHF PGYWRNKTRL RSGKNFMFLS VSLSKDRSEQ QCKKALAQND 101: EIPGKDNRKR SVIGGVRRRG TMNTRKHLWA GAVAAMVSKT FLAPLERLKL EYTVRGEQRN LLVVAKSIAT TQGLTGFWKG NLLNVLRTAP FKAVNFCAYD 201: TYRKQLLKIA GNQEATNFER FVAGAAAGIT ATVLCLPLDT IRTKLVARGG EALGGIGGAF RYMIQTEGLF SLYKGLVPSI ASMALSGAVF YGVYDILKSS 301: FLHTPEGRKR LIDMKQQGQE LNALDRLELG PIRTLMYGAI AGACTEVATY PFEVVRRQLQ MQMGKNKLNA LAMGFNIIER GGIPALYAGL LPSLLQVLPS 401: ASISYFVYEC MKIVLKVE |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)