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AT1G77060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phosphoenolpyruvate carboxylase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phosphoenolpyruvate carboxylase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Isocitrate lyase/phosphorylmutase, conserved site (InterPro:IPR018523), Isocitrate lyase/phosphorylmutase (InterPro:IPR000918); BEST Arabidopsis thaliana protein match is: Phosphoenolpyruvate carboxylase family protein (TAIR:AT1G21440.1); Has 8811 Blast hits to 8811 proteins in 1498 species: Archae - 116; Bacteria - 4944; Metazoa - 32; Fungi - 514; Plants - 174; Viruses - 0; Other Eukaryotes - 3031 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G77060-MONOMEREC:2.7.8.23eggNOG:COG2513eggNOG:ENOG410IP73
EMBL:AC002291EMBL:AY084963EMBL:CP002684EnsemblPlants:AT1G77060
EnsemblPlants:AT1G77060.1entrez:844041Gene3D:3.20.20.60GeneID:844041
Genevisible:O49290GO:GO:0008807GO:GO:0009507GO:GO:0009570
Gramene:AT1G77060.1hmmpanther:PTHR21631hmmpanther:PTHR21631:SF4HOGENOM:HOG000220040
InParanoid:O49290InterPro:IPR015813InterPro:IPR018523KEGG:ath:AT1G77060
OMA:MAEVNGAPaxDb:O49290Pfam:O49290Pfam:PF13714
PhylomeDB:O49290PIR:E96799PRIDE:O49290PRO:PR:O49290
PROSITE:PS00161ProteinModelPortal:O49290Proteomes:UP000006548RefSeq:NP_565148.1
scanprosite:PS00161SMR:O49290STRING:3702.AT1G77060.1SUPFAM:SSF51621
TAIR:AT1G77060UniGene:At.34553UniProt:O49290
Coordinates (TAIR10) chr1:-:28951804..28953449
Molecular Weight (calculated) 36567.80 Da
IEP (calculated) 6.86
GRAVY (calculated) -0.10
Length 339 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMLMAVKTT SLCCSSLNLT ASPTFRRNPR AARLVNPTAR IQTRFHRLIE EQGIVLMPGC YDALSAAIVQ QTGFSAGFIS GYALSASLLG KPDFGLLTPP
101: EMAATARSVC ASAPNIPIIA DADTGGGNAL NIQRTVKDLI AAGAAGCFLE DQAWPKKCGH MRGKQVIPAE EHAAKIASAR DAIGDSDFFL VARTDVRATS
201: AKSGLEDAIA RVNLYMEAGA DASFVEAPRD DDELKEIGKR TKGYRVCNMI EGGVTPLHTP DELKEMGFHL IVHPLTALYA STRALVDVLK TLKENGSTRD
301: HLQKMATFEE FNSLVDLDSW FELEARYSNL RNALGTTKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)