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AT1G15730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cobalamin biosynthesis CobW-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cobalamin biosynthesis CobW-like protein; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 17 (TAIR:AT1G80480.1); Has 16369 Blast hits to 11834 proteins in 1861 species: Archae - 128; Bacteria - 8189; Metazoa - 1729; Fungi - 553; Plants - 409; Viruses - 6; Other Eukaryotes - 5355 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0523eggNOG:KOG2743EMBL:AC034256EMBL:AF367261
EMBL:AY093965EMBL:BT000764EMBL:CP002684EnsemblPlants:AT1G15730
EnsemblPlants:AT1G15730.1entrez:838142Gene3D:3.30.1220.10Gene3D:3.40.50.300
GeneID:838142GO:GO:0009507GO:GO:0009570Gramene:AT1G15730.1
hmmpanther:PTHR13748hmmpanther:PTHR13748:SF43HOGENOM:HOG000182211IntAct:Q9LMR1
InterPro:IPR003495InterPro:IPR011629InterPro:IPR027417KEGG:ath:AT1G15730
OMA:TINSMAHPfam:PF02492Pfam:PF07683PhylomeDB:Q9LMR1
PIR:E86291Proteomes:UP000006548RefSeq:NP_173025.1SMART:SM00833
SMR:Q9LMR1STRING:3702.AT1G15730.1SUPFAM:0041413SUPFAM:SSF52540
SUPFAM:SSF90002TAIR:AT1G15730UniGene:At.16909UniGene:At.48193
UniProt:Q9LMR1
Coordinates (TAIR10) chr1:-:5407535..5409937
Molecular Weight (calculated) 50261.40 Da
IEP (calculated) 5.23
GRAVY (calculated) -0.33
Length 448 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLLKLDIA TTFLAFIVPR ANTSLNHRFA SARLSTATVS LRTKSSSFYS AALYSDSRRR FHSAVASDSS LAVVDDEDIF DVASEILPDN RIPATIITGF
101: LGSGKTTLLN HILTGDHGKR IAVIENEFGE VDIDGSLVAA QTAGAEDIMM LNNGCLCCTV RGDLVRMISE MVQTKKGRFD HIVIETTGLA NPAPIIQTFY
201: AEDEIFNDVK LDGVVTLVDA KHARLHLDEV KPEGYVNEAV EQIAYADRII VNKTDLVGEP ELASVMQRIK TINSMAHMKR TKYGKVDLDY VLGIGGFDLE
301: RIESSVNEEE KEDREGHDDH HHGHDCHDHH NEHEHEHEHE HHHSHDHTHD PGVGSVSIVC EGDLDLEKAN MWLGALLYQR SEDIYRMKGI LSVQDMDERF
401: VFQGVHEIFE GSPDRLWRKD ETRTNKIVFI GKNLNREELE MGFRACLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)