suba logo
AT1G76460.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G20880.2); Has 4261 Blast hits to 4252 proteins in 371 species: Archae - 0; Bacteria - 0; Metazoa - 1989; Fungi - 541; Plants - 1112; Viruses - 30; Other Eukaryotes - 589 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111PGTeggNOG:KOG0149EMBL:CP002684EnsemblPlants:AT1G76460
EnsemblPlants:AT1G76460.1entrez:843979Gene3D:3.30.70.330GeneID:843979
GO:GO:0000166GO:GO:0003676Gramene:AT1G76460.1hmmpanther:PTHR24012
hmmpanther:PTHR24012:SF421InParanoid:F4I2E4InterPro:IPR000504InterPro:IPR012677
KEGG:ath:AT1G76460OMA:AWETNSDPaxDb:F4I2E4Pfam:PF00076
Pfscan:PS50102PRIDE:F4I2E4PROSITE:PS50102ProteinModelPortal:F4I2E4
Proteomes:UP000006548RefSeq:NP_565132.2SMART:SM00360SMR:F4I2E4
STRING:3702.AT1G76460.1SUPFAM:SSF54928TAIR:AT1G76460UniGene:At.43912
UniGene:At.69045UniGene:At.70089UniProt:F4I2E4
Coordinates (TAIR10) chr1:-:28686932..28688506
Molecular Weight (calculated) 30921.50 Da
IEP (calculated) 8.50
GRAVY (calculated) -0.37
Length 285 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)