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AT1G76440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.963
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HSP20-like chaperones superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G20870.1); Has 70 Blast hits to 70 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:843977eggNOG:ENOG410J0GCeggNOG:ENOG41115QCEMBL:AC012394
EMBL:AC015450EMBL:AK317538EMBL:AY128378EMBL:BT000371
EMBL:CP002684EnsemblPlants:AT1G76440EnsemblPlants:AT1G76440.1EnsemblPlants:AT1G76440.2
EnsemblPlants:AT1G76440.3entrez:843977Gene3D:2.60.40.790GeneID:843977
Gramene:AT1G76440.1Gramene:AT1G76440.2Gramene:AT1G76440.3hmmpanther:PTHR34661
HOGENOM:HOG000090358InterPro:IPR002068InterPro:IPR008978KEGG:ath:AT1G76440
OMA:HSKVISHPfscan:PS01031PhylomeDB:Q9S842PIR:B96792
PROSITE:PS01031Proteomes:UP000006548RefSeq:NP_001031287.1RefSeq:NP_177770.1
RefSeq:NP_974155.1SUPFAM:SSF49764TAIR:AT1G76440UniGene:At.34653
UniProt:Q9S842
Coordinates (TAIR10) chr1:-:28682371..28682999
Molecular Weight (calculated) 15526.90 Da
IEP (calculated) 7.85
GRAVY (calculated) 0.07
Length 143 amino acids
Sequence (TAIR10)
(BLAST)
001: MNAENNQTTT THSKVISHVF CTGTAKLGSV GPPIGLVDIG VSEVAYIFRV SLPGIEKNQD KIKCEIQREG RVCIQGVIPE IAIPSDTGCL YRMQVQQLCP
101: PGPFSITFNL PGQVDPRLFS PNFRSDGIFE VVVVKLGVRI PTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)