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AT1G74350.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Intron maturase, type II family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Intron maturase, type II family protein; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, shoot apex, stem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Intron maturase, type II (InterPro:IPR000442), RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477); BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase) (TAIR:AT5G04050.1); Has 3669 Blast hits to 3587 proteins in 1202 species: Archae - 32; Bacteria - 2608; Metazoa - 4; Fungi - 43; Plants - 874; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3344eggNOG:ENOG410IPYDEMBL:AC011765EMBL:CP002684
EnsemblPlants:AT1G74350EnsemblPlants:AT1G74350.1entrez:843776GeneID:843776
GO:GO:0005739GO:GO:0006397GO:GO:0009845GO:GO:0090351
GO:GO:1900864Gramene:AT1G74350.1hmmpanther:PTHR33642hmmpanther:PTHR33642:SF3
HOGENOM:HOG000084121InterPro:IPR000477InterPro:IPR024937KEGG:ath:AT1G74350
OMA:PHFSKISPfam:PF00078Pfam:PF01348PhylomeDB:Q9CA78
PIR:B96772Proteomes:UP000006548RefSeq:NP_177575.1STRING:3702.AT1G74350.1
TAIR:AT1G74350UniGene:At.66136UniProt:Q9CA78
Coordinates (TAIR10) chr1:-:27949022..27951283
Molecular Weight (calculated) 85010.10 Da
IEP (calculated) 8.20
GRAVY (calculated) -0.26
Length 753 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKETGMFS LAGELASLVE ESSSHVDDDS KPRSRMELKR SLELRLKKRV KEQCINGKFS DLLKKVIARP ETLRDAYDCI RLNSNVSITE RNGSVAFDSI
101: AEELSSGVFD VASNTFSIVA RDKTKEVLVL PSVALKVVQE AIRIVLEVVF SPHFSKISHS CRSGRGRASA LKYINNNISR SDWCFTLSLN KKLDVSVFEN
201: LLSVMEEKVE DSSLSILLRS MFEARVLNLE FGGFPKGHGL PQEGVLSRVL MNIYLDRFDH EFYRISMRHE ALGLDSKTDE DSPGSKLRSW FRRQAGEQGL
301: KSTTEQDVAL RVYCCRFMDE IYFSVSGPKK VASDIRSEAI GFLRNSLHLD ITDETDPSPC EATSGLRVLG TLVRKNVRES PTVKAVHKLK EKVRLFALQK
401: EEAWTLGTVR IGKKWLGHGL KKVKESEIKG LADSNSTLSQ ISCHRKAGME TDHWYKILLR IWMEDVLRTS ADRSEEFVLS KHVVEPTVPQ ELRDAFYKFQ
501: NAAAAYVSSE TANLEALLPC PQSHDRPVFF GDVVAPTNAI GRRLYRYGLI TAKGYARSNS MLILLDTAQI IDWYSGLVRR WVIWYEGCSN FDEIKALIDN
601: QIRMSCIRTL AAKYRIHENE IEKRLDLELS TIPSAEDIEQ EIQHEKLDSP AFDRDEHLTY GLSNSGLCLL SLARLVSESR PCNCFVIGCS MAAPAVYTLH
701: AMERQKFPGW KTGFSVCIPS SLNGRRIGLC KQHLKDLYIG QISLQAVDFG AWR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)