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AT1G73875.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNAse I-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT3G18500.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G73875-MONOMEREC:3.1.13.4eggNOG:COG5239eggNOG:KOG2338
EMBL:AC016662EMBL:AK230427EMBL:BT010832EMBL:BT011303
EMBL:CP002684EnsemblPlants:AT1G73875EnsemblPlants:AT1G73875.1entrez:843724
Gene3D:3.60.10.10GeneID:843724GO:GO:0003723GO:GO:0004535
GO:GO:0005634GO:GO:0005737GO:GO:0006351GO:GO:0006355
GO:GO:0046872hmmpanther:PTHR12121hmmpanther:PTHR12121:SF29HOGENOM:HOG000241777
InParanoid:Q0WKY2InterPro:IPR005135KEGG:ath:AT1G73875OMA:LCVLEMN
PaxDb:Q0WKY2Pfam:PF03372Pfam:Q0WKY2PhylomeDB:Q0WKY2
PRIDE:Q0WKY2PRO:PR:Q0WKY2ProteinModelPortal:Q0WKY2Proteomes:UP000006548
RefSeq:NP_683491.2SMR:Q0WKY2STRING:3702.AT1G73875.1SUPFAM:SSF56219
TAIR:AT1G73875UniGene:At.45165UniProt:Q0WKY2
Coordinates (TAIR10) chr1:+:27781112..27784571
Molecular Weight (calculated) 52154.60 Da
IEP (calculated) 9.24
GRAVY (calculated) -0.67
Length 454 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGYERKNTT ANSITITKRK RNSISEQSEN VYEKSNRKES ITLKPHRSFT PGFSQRDCKP VRHSKSSLRR RRRTKEKISS SVEREWVFSA NNFENLADKL
101: VLVSYNLLGV DNASNHMDLY YNVPRKHLEW SRRKHLICKE ISRYNASILC LQEVDRFDDL DVLLKNRGFR GVHKSRTGEA SDGCAIFWKE NLFELLDHQH
201: IEFDKFGMRN NVAQLCVLEM NCEEDPKSKL RVRSSDPRRL VVGNIHVLFN PKRGDIKLGQ VRLFLEKAYK LSQEWGNIPV AIAGDLNSTP QSAIYDFIAS
301: ADLDTQLHDR RQISGQTEVE PKERSFRNHY AFSASASISG SLLNEWSQEE LQLATGGQET THVQHQLKLN SAYSGVPGTY RTRDQRGEPL ATTYHSRFLG
401: TVDYIWHTKE LVPVRVLETL PADVLRRTGG LPSENWGSDH LAIACELGFV NDWQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)