AT1G70990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : proline-rich family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
proline-rich family protein; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G23040.1); Has 16801 Blast hits to 6974 proteins in 537 species: Archae - 26; Bacteria - 1654; Metazoa - 5189; Fungi - 1184; Plants - 5387; Viruses - 1054; Other Eukaryotes - 2307 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:26767520..26768050 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 19378.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.07 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||
| Length | 176 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHPLTKPPHQ IFNSFYVQPK NLPKPLFIRF SRHITTLTMP EKTRRTKALA ATLLTTVVFL TFPMIINASD SSTNRKLEED PIKCTPCLQN IPPPSPPPPS 101: PPPPSQACPP PPLPPSPPKK SYCPPPPSTY IYMTGPPGEL YPIDQQFGAA VTKSFTVVKI SGLIAFGVMS FLMIMN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)