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AT1G70810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22215637 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G70800.1); Has 2955 Blast hits to 2573 proteins in 230 species: Archae - 0; Bacteria - 3; Metazoa - 1505; Fungi - 422; Plants - 763; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5038eggNOG:KOG1030EMBL:AC008148EMBL:AF360142
EMBL:AY086279EMBL:AY142624EMBL:CP002684EnsemblPlants:AT1G70810
EnsemblPlants:AT1G70810.1entrez:843418Gene3D:2.60.40.150GeneID:843418
Genevisible:Q9SSL1GO:GO:0005096GO:GO:0005543GO:GO:0005634
GO:GO:0005886GO:GO:0009738GO:GO:0009789GO:GO:0043547
GO:GO:0046872Gramene:AT1G70810.1hmmpanther:PTHR23180hmmpanther:PTHR23180:SF289
HOGENOM:HOG000238659InterPro:IPR000008KEGG:ath:AT1G70810OMA:MGDAKID
PaxDb:Q9SSL1Pfam:PF00168Pfscan:PS50004PhylomeDB:Q9SSL1
PIR:G96732PRO:PR:Q9SSL1PROSITE:PS50004ProteinModelPortal:Q9SSL1
Proteomes:UP000006548RefSeq:NP_565002.1SMART:SM00239SMR:Q9SSL1
STRING:3702.AT1G70810.1SUPFAM:SSF49562TAIR:AT1G70810UniGene:At.22408
UniProt:Q9SSL1
Coordinates (TAIR10) chr1:+:26704207..26705091
Molecular Weight (calculated) 18658.60 Da
IEP (calculated) 4.91
GRAVY (calculated) -0.29
Length 165 amino acids
Sequence (TAIR10)
(BLAST)
001: MEELVGLLRI RVKRGINLAQ RDTLSSDPFV VITMGSQKLK TRVVENNCNP EWNEELTLAL RHPDEPVNLI VYDKDTFTSH DKMGDAKIDI KPFLEVHKMG
101: LQELPDGTEI KRVVPNRENC LAEASSIVSN NGKIVQNMIL LLRNVECGEV EIQLEWIDIP GSRGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)