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AT1G70280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NHL domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NHL domain-containing protein; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G23880.1); Has 7288 Blast hits to 4121 proteins in 430 species: Archae - 61; Bacteria - 1521; Metazoa - 1473; Fungi - 465; Plants - 266; Viruses - 2; Other Eukaryotes - 3500 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKFUeggNOG:ENOG410ZJZPEMBL:AY062688EMBL:AY114666
EMBL:CP002684EnsemblPlants:AT1G70280EnsemblPlants:AT1G70280.1entrez:843364
ExpressionAtlas:Q8W4B0Gene3D:2.120.10.30GeneID:843364GO:GO:0016021
Gramene:AT1G70280.1hmmpanther:PTHR13833hmmpanther:PTHR13833:SF42HOGENOM:HOG000238931
InterPro:IPR001258InterPro:IPR011042ncoils:CoilPfam:PF01436
PhylomeDB:Q8W4B0Proteomes:UP000006548RefSeq:NP_850974.1SMR:Q8W4B0
STRING:3702.AT1G70280.2SUPFAM:SSF101898TAIR:AT1G70280TMHMM:TMhelix
UniGene:At.10660UniProt:Q8W4B0
Coordinates (TAIR10) chr1:-:26466086..26468116
Molecular Weight (calculated) 50304.60 Da
IEP (calculated) 6.94
GRAVY (calculated) -0.77
Length 447 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKFENGYSV ETVFDGSKLG IEPYSIEVLP NGELLILDSE NSNIYKISSS LSLYSRPRLV TGSPEGYPGH VDGRLRDAKL NHPKGLTVDD RGNIYVADTV
101: NNAIRKISEG GVTTIAGGKT VRNGGHVDGP SEDAKFSNDF DVVYVGSSCS LLVIDRGNKA IREIQLHFDD CAYQYGSGFP LGIAVLVAAG FFGYMLALLQ
201: RRVGSIVSSH NDQEMFEADP DQKPMKHSRP SLIPAGDEQL EKQEETFVVS LGKLVSNAWE SVMEILRKKQ TGTSFQQYHG TTKQSAAFST STPWPIQESF
301: VIRDEDGPPP VEPRNPTPRK TYAFMSKDAE KMQQLRQSRA FYSSWDAEFP NQQQQQQKQH QKHQHQQQQQ QQHRRHYSSI PHTYYEQDSE KSNEIVFGAV
401: QEQSSKRVAK PKPKPIESGD QMNNNTQQNL HYRSHSVSYP YGYYPNT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)