AT1G68920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: cryptochrome-interacting basic-helix-loop-helix 5 (TAIR:AT1G26260.2); Has 3331 Blast hits to 3218 proteins in 330 species: Archae - 2; Bacteria - 230; Metazoa - 358; Fungi - 119; Plants - 2228; Viruses - 11; Other Eukaryotes - 383 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:25915620..25917675 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52390.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.02 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 486 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP 101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS 201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQKNSEAAQ SHRSQQSEEE PDNNGDEKRN DEQSPNSPGK KSNSGKQQGK QSSDPPKDGY 301: IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPQMDFN LEGLLAKDAL QLRAGSSSTT 401: PFPPNMSMAY PPLPHGFMQQ TLSSIGRTIT SPLSPMNGGF KRQETNGWEG DLQNVIHINY GAGDVTPDPQ AAATASLPAA NMKVEP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)