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AT4G34370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARIADNE 1 (ARI1); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G16090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:14869EC:6.3.2.-eggNOG:ENOG410XP9YeggNOG:KOG1815
EMBL:AJ510204EMBL:AL035521EMBL:AL161585EMBL:AY050864
EMBL:AY117264EMBL:CP002687EnsemblPlants:AT4G34370EnsemblPlants:AT4G34370.1
entrez:829587ExpressionAtlas:Q949V6Gene3D:3.30.40.10GeneID:829587
Genevisible:Q949V6GO:GO:0000151GO:GO:0000209GO:GO:0005737
GO:GO:0008270GO:GO:0016874GO:GO:0031624GO:GO:0032436
GO:GO:0042787GO:GO:0061630hmmpanther:PTHR11685hmmpanther:PTHR11685:SF119
HOGENOM:HOG000239885InParanoid:Q949V6InterPro:IPR001841InterPro:IPR002867
InterPro:IPR013083InterPro:IPR031127OMA:ESETINWPANTHER:PTHR11685
PaxDb:Q949V6Pfam:PF01485Pfam:Q949V6Pfscan:PS50089
PhylomeDB:Q949V6PIR:T04783PRIDE:Q949V6PRO:PR:Q949V6
PROSITE:PS50089ProteinModelPortal:Q949V6Proteomes:UP000006548RefSeq:NP_567966.1
SMART:SM00647SMR:Q949V6STRING:3702.AT4G34370.1SUPFAM:SSF57850
TAIR:AT4G34370tair10-symbols:ARI1tair10-symbols:ATARI1UniGene:At.2620
UniPathway:UPA00143UniProt:Q949V6
Coordinates (TAIR10) chr4:+:16434547..16437037
Molecular Weight (calculated) 68792.90 Da
IEP (calculated) 5.63
GRAVY (calculated) -0.64
Length 597 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDYFSAEEE ACYYSSDQDS LDGIDNEESE LQPLSSKRSN TQVITQESLL AAQREDLLRV MELLSIKEHH ARTLLIHYQW DVEKLFAVFV EKGKDSLFSG
101: AGVTVFDYQY GNSSFPQSSQ MSCDVCMEDL PGDHMTRMDC GHCFCNNCWT EHFTVQINEG QSKRIRCMAH QCNAICDEDI VRSLVSKKRP DLAAKFDRYL
201: LESYIEDNRM VKWCPSTPHC GNAIRAEDDK LCEVECSCGL QFCFSCLCQA HSPCSCLMWE LWRKKCRDES ETINWITVHT KLCPKCYKPV EKNGGCNLVR
301: CICGQCFCWL CGGATGSDHT YRSIAGHSCG RYQDDKEKQM ERAKRDLNRY THYHHRYKAH TDSSKLEDKL RDTIHEKVSK SEKRELKLKD FSWVTNGLDR
401: LFRSRRVLSY SYAFAYYMFG EEMFKDEMTP EEREIKKNLF EDQQQQLESN VEKLSQFLEE PFDEFSNDKV MAIRIQIINL SVAVDTLCKK MYECIENDLL
501: GSLQLGIHNI SPYRSKGIEQ AAQFYASWNS KDADKFQPLD SGTSGVTSRP EQASGSRSSE DTICSSSQKR PKKEGSFLNN KVTLLDLNLP ADFVDQN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)