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AT1G67500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : recovery protein 3
Curator
Summary (TAIR10)
Encodes the catalytic subunit of DNA polymerase zeta.Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).
Computational
Description (TAIR10)
recovery protein 3 (REV3); CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134); BEST Arabidopsis thaliana protein match is: DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (TAIR:AT5G63960.1); Has 6179 Blast hits to 5524 proteins in 1389 species: Archae - 386; Bacteria - 883; Metazoa - 612; Fungi - 614; Plants - 201; Viruses - 2029; Other Eukaryotes - 1454 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G67500-MONOMERBioCyc:ARA:GQT-271-MONOMEREC:2.7.7.7eggNOG:COG0417
eggNOG:KOG0968EMBL:AB114052EMBL:AC004393EMBL:AC011020
EMBL:CP002684EnsemblPlants:AT1G67500EnsemblPlants:AT1G67500.1entrez:843071
ExpressionAtlas:Q766Z3Gene3D:3.30.420.10Gene3D:3.90.1600.10GeneID:843071
Genevisible:Q766Z3GO:GO:0000166GO:GO:0003677GO:GO:0003887
GO:GO:0005634GO:GO:0006260GO:GO:0006974GO:GO:0008408
GO:GO:0016035GO:GO:0019985GO:GO:0046872GO:GO:0051539
GO:GO:0071494hmmpanther:PTHR10322hmmpanther:PTHR10322:SF5HOGENOM:HOG000084343
InterPro:IPR006133InterPro:IPR006134InterPro:IPR006172InterPro:IPR012337
InterPro:IPR017964InterPro:IPR023211InterPro:IPR025687InterPro:IPR030559
iPTMnet:Q766Z3KEGG:00230+2.7.7.7KEGG:00240+2.7.7.7PANTHER:PTHR10322:SF5
PaxDb:Q766Z3Pfam:PF00136Pfam:PF03104Pfam:PF14260
Pfam:Q766Z3PhylomeDB:Q766Z3PIR:D96698PIR:T02155
PRIDE:Q766Z3PRINTS:PR00106PRO:PR:Q766Z3PROSITE:PS00116
ProteinModelPortal:Q766Z3Proteomes:UP000006548Reactome:R-ATH-110312Reactome:R-ATH-5655862
Reactome:R-ATH-5656121RefSeq:NP_176917.2scanprosite:PS00116SMART:SM00486
STRING:3702.AT1G67500.2SUPFAM:SSF53098SUPFAM:SSF56672TAIR:AT1G67500
tair10-symbols:ATREV3tair10-symbols:REV3UniGene:At.35644UniProt:Q766Z3
Coordinates (TAIR10) chr1:-:25287707..25296714
Molecular Weight (calculated) 210859.00 Da
IEP (calculated) 6.15
GRAVY (calculated) -0.37
Length 1890 amino acids
Sequence (TAIR10)
(BLAST)
0001: MADSQSGSNV FSLRIVSIDY YMASPIPGYN ICYSSFQGSE VNEVPVIRIY GSTPAGQKTC LHIHRALPYL YIPCSEIPLE HHKGVDGSTL ALSLELEKAL
0101: KLKGNAASKR QHIHDCEIVR AKKFYGYHST EEAFVKIYLS YHPPDVARAA SLLLAGAVLG KSLQPYESHI PFILQFLVDY NLYGMGHVHI SKMKFRSPVP
0201: HHFRPRRFDL DDCPGQRIDE VAITKANSSA AASVSFPVWS LSTIPGQWMW NLSEESDTPL SQSQHRHQHH YRRQSLCELE GDATSSDILN QQFKMYNSLS
0301: QAQSDTNMVQ SLVAIWEEEY ERTGVHDAPI PPDPGKPSAA DVLQTMSDYV GFGNMLKEML NKVELSPPGM KPTAVSSAGP DMHAKPEITD LQALNHMVGT
0401: CSEFPASEQL SPLGEKSEEA SMENDEYMKT PTDRDTPAQI QDAEALGLFK WFASSQAAED INSDDEILRE TILSPLLPLA SINKVLEMAS TDYVSQSQKE
0501: CQDILDSQEN LPDFGSSTKR ALPSNPDSQN LRTSSDKQSL EIEVASDVPD SSTSNGASEN SFRRYRKSDL HTSEVMEYKN RSFSKSNKPS NSVWGPLPFT
0601: LTKNLQKDFD STNASDKLGL TKISSYPMNE MTDNYIVPVK EHQADVCNTI DRNVLAGCSL RDLMRKKRLC HGESPVSQHM KSRKVRDSRH GEKNECTLRC
0701: EAKKQGPALS AEFSEFVCGD TPNLSPIDSG NCECNISTES SELHSVDRCS AKETASQNSD EVLRNLSSTT VPFGKDPQTV ESGTLVSSNI HVGIEIDSVQ
0801: KSGREQESTA NETDETGRLI CLTLSKKPPS LDCLSAGLQD SAHSHEIHAR EKQHDEYEGN SNDIPFFPLE DNKEEKKHFF QGTSLGIPLH HLNDGSNLYL
0901: LTPAFSPPSV DSVLQWISND KGDSNIDSEK QPLRDNHNDR GASFTDLASA SNVVSVSEHV EQHNNLFVNS ESNAYTESEI DLKPKGTFLN LNLQASVSQE
1001: LSQISGPDGK SGPTPLSQMG FRDPASMGAG QQLTILSIEV HAESRGDLRP DPRFDSVNVI ALVVQNDDSF VAEVFVLLFS PDSIDQRNVD GLSGCKLSVF
1101: LEERQLFRYF IETLCKWDPD VLLGWDIQGG SIGFLAERAA QLGIRFLNNI SRTPSPTTTN NSDNKRKLGN NLLPDPLVAN PAQVEEVVIE DEWGRTHASG
1201: VHVGGRIVLN AWRLIRGEVK LNMYTIEAVS EAVLRQKVPS IPYKVLTEWF SSGPAGARYR CIEYVIRRAN LNLEIMSQLD MINRTSELAR VFGIDFFSVL
1301: SRGSQYRVES MLLRLAHTQN YLAISPGNQQ VASQPAMECV PLVMEPESAF YDDPVIVLDF QSLYPSMIIA YNLCFSTCLG KLAHLKMNTL GVSSYSLDLD
1401: VLQDLNQILQ TPNSVMYVPP EVRRGILPRL LEEILSTRIM VKKAMKKLTP SEAVLHRIFN ARQLALKLIA NVTYGYTAAG FSGRMPCAEL ADSIVQCGRS
1501: TLEKAISFVN ANDNWNARVV YGDTDSMFVL LKGRTVKEAF VVGQEIASAI TEMNPHPVTL KMEKVYHPCF LLTKKRYVGY SYESPNQREP IFDAKGIETV
1601: RRDTCEAVAK TMEQSLRLFF EQKNISKVKS YLYRQWKRIL SGRVSLQDFI FAKEVRLGTY STRDSSLLPP AAIVATKSMK ADPRTEPRYA ERVPYVVIHG
1701: EPGARLVDMV VDPLVLLDVD TPYRLNDLYY INKQIIPALQ RVFGLVGADL NQWFLEMPRL TRSSLGQRPL NSKNSHKTRI DYFYLSKHCI LCGEVVQESA
1801: QLCNRCLQNK SAAAATIVWK TSKLEREMQH LATICRHCGG GDWVVQSGVK CNSLACSVFY ERRKVQKELR GLSSIATESE LYPKCMAEWF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)