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AT1G66240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22215637 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homolog of anti-oxidant 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
homolog of anti-oxidant 1 (ATX1); FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: copper chaperone (TAIR:AT3G56240.1); Has 1720 Blast hits to 1673 proteins in 288 species: Archae - 4; Bacteria - 215; Metazoa - 140; Fungi - 221; Plants - 1117; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Protein Annotations
BioGrid:28161eggNOG:COG2608eggNOG:KOG1603EMBL:AC066691
EMBL:AK319082EMBL:AY039898EMBL:AY077678EMBL:CP002684
EnsemblPlants:AT1G66240EnsemblPlants:AT1G66240.1entrez:842940ExpressionAtlas:Q94BT9
GeneID:842940Genevisible:Q94BT9GO:GO:0000785GO:GO:0005829
GO:GO:0006825GO:GO:0046872Gramene:AT1G66240.1hmmpanther:PTHR22814
hmmpanther:PTHR22814:SF73HOGENOM:HOG000038877IntAct:Q94BT9InterPro:IPR006121
KEGG:ath:AT1G66240KO:K07213OMA:FWGADEAPaxDb:Q94BT9
Pfam:PF00403Pfam:Q94BT9Pfscan:PS50846PIR:D96687
PRIDE:Q94BT9PRO:PR:Q94BT9PROSITE:PS50846ProteinModelPortal:Q94BT9
Proteomes:UP000006548RefSeq:NP_001154453.1RefSeq:NP_564870.1SMR:Q94BT9
STRING:3702.AT1G66240.1SUPFAM:SSF55008TAIR:AT1G66240tair10-symbols:ATATX1
tair10-symbols:ATX1UniGene:At.57055UniProt:Q94BT9
Coordinates (TAIR10) chr1:-:24686445..24687327
Molecular Weight (calculated) 11430.90 Da
IEP (calculated) 8.21
GRAVY (calculated) 0.02
Length 106 amino acids
Sequence (TAIR10)
(BLAST)
001: MLKDLFQAVS YQNTASLSLF QALSVVESKA MSQTVVLRVA MTCEGCVGAV KRVLGKMEGV ESFDVDIKEQ KVTVKGNVQP DAVLQTVTKT GKKTAFWEAE
101: GETAKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)