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AT1G65240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 14517339
AmiGO : plasma membrane 17317660
AmiGO : plasma membrane 17644812
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
TAIR : plasma membrane 14517339
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic aspartyl protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G36260.1); Has 3473 Blast hits to 3458 proteins in 317 species: Archae - 0; Bacteria - 0; Metazoa - 737; Fungi - 714; Plants - 1798; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1820-MONOMEREC:3.4.23.-eggNOG:ENOG410XNV7eggNOG:KOG1339
EMBL:AC007230EMBL:CP002684EnsemblPlants:AT1G65240EnsemblPlants:AT1G65240.1
entrez:842831Gene3D:2.40.70.10GeneID:842831Genevisible:Q9S9K4
GO:GO:0004190GO:GO:0005886GO:GO:0031225GO:GO:0046658
Gramene:AT1G65240.1hmmpanther:PTHR13683hmmpanther:PTHR13683:SF287HOGENOM:HOG000006100
InParanoid:Q9S9K4InterPro:IPR001461InterPro:IPR021109InterPro:IPR032799
InterPro:IPR032861InterPro:IPR033121KEGG:ath:AT1G65240MEROPS:A01.A37
OMA:VKLHIVEPANTHER:PTHR13683PaxDb:Q9S9K4Pfam:PF14541
Pfam:PF14543Pfam:Q9S9K4Pfscan:PS51767PhylomeDB:Q9S9K4
PIR:E96676PRIDE:Q9S9K4PRINTS:PR00792PRO:PR:Q9S9K4
PROSITE:PS51767ProteinModelPortal:Q9S9K4Proteomes:UP000006548RefSeq:NP_176703.1
SMR:Q9S9K4STRING:3702.AT1G65240.1SUPFAM:SSF50630TAIR:AT1G65240
TMHMM:TMhelixUniGene:At.11165UniGene:At.35907UniProt:Q9S9K4
Coordinates (TAIR10) chr1:-:24230963..24233349
Molecular Weight (calculated) 51831.10 Da
IEP (calculated) 5.28
GRAVY (calculated) 0.02
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: MELRRKLCIV VAVFVIVIEF ASANFVFKAQ HKFAGKKKNL EHFKSHDTRR HSRMLASIDL PLGGDSRVDS VGLYFTKIKL GSPPKEYHVQ VDTGSDILWI
101: NCKPCPKCPT KTNLNFRLSL FDMNASSTSK KVGCDDDFCS FISQSDSCQP ALGCSYHIVY ADESTSDGKF IRDMLTLEQV TGDLKTGPLG QEVVFGCGSD
201: QSGQLGNGDS AVDGVMGFGQ SNTSVLSQLA ATGDAKRVFS HCLDNVKGGG IFAVGVVDSP KVKTTPMVPN QMHYNVMLMG MDVDGTSLDL PRSIVRNGGT
301: IVDSGTTLAY FPKVLYDSLI ETILARQPVK LHIVEETFQC FSFSTNVDEA FPPVSFEFED SVKLTVYPHD YLFTLEEELY CFGWQAGGLT TDERSEVILL
401: GDLVLSNKLV VYDLDNEVIG WADHNCSSSI KIKDGSGGVY SVGADNLSSA PRLLMITKLL TILSPLIVMA FTSLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)