AT1G65180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: intracellular; EXPRESSED IN: shoot apex, root, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, C2H2-type (InterPro:IPR007087), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G43890.1); Has 2522 Blast hits to 1195 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 493; Fungi - 0; Plants - 1927; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:24211861..24213822 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75342.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.45 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||
| Length | 653 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEPEMVRLPI HEHWLTPARD NRWGKCCGLQ FKTISDGYNC RKCRYFFHKS CSNCPKEINH PSHKCDKNLS LITNFASWSV RCRTCKETIQ PYIQNYECQR 101: CEFNIHLDCF KYPPPKVIDF PQNHDHKLKL EMVRSSFTCF TCGKGGSGYP YKCHECDLAF HVDCEKYGAE VNHPSHSLHT LKLITGKPPA YTDGNCSLCG 201: KKIFDEMFYH CSACNFTLDL RCVSLPPPLN LHDQNTHNHE LTLMPKLISF TCTTCGLHGD RSPYVCLQCN FTSHNNCSGF PWVININRHD HRVSRTSLLG 301: IIDSVCGVCR KKMDWSCGGY SCKRCSESTF HTKCATREDV WDGIEMKDEP EEDEPMEPFE VISEGIIRHF SHIEHNLRLD KSGTFVEERS CKACAYPIYH 401: DPFYSCMSCD FLLHENCAKH PTRKRHVLSN KPYILHASQR NYSKCKACGV FFNCFIYGTF PFGLDVRCAS FSGSLVHPSH QHPLFYTSPK GVCSACNKET 501: SHVLRCVEDK CGYALDFKCA LLPHEVKHRV DDHFLSLCYG ERDASGKYWC DICEKETDPT KWFYTCKDCG VTLHTNCVLG DFRGLEPETN IVLDDDRMQM 601: TLYETVRNNS MSRPVCYKCK YHCIFPIILK VTDEDKYFCS ISCCDIKTLP FYN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)