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AT1G11160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.611
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G61210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQACeggNOG:KOG0267EMBL:CP002684EnsemblPlants:AT1G11160
EnsemblPlants:AT1G11160.1entrez:837657Gene3D:2.130.10.10GeneID:837657
GO:GO:0005874GO:GO:0008352GO:GO:0051013GO:GO:0080008
Gramene:AT1G11160.1HAMAP:MF_03022hmmpanther:PTHR19845hmmpanther:PTHR19845:SF5
InParanoid:F4I7E1InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
InterPro:IPR019775InterPro:IPR020472InterPro:IPR026962InterPro:IPR028021
iPTMnet:F4I7E1KEGG:ath:AT1G11160KO:K18643OMA:VRSTVFH
PaxDb:F4I7E1Pfam:PF00400Pfam:PF13925Pfscan:PS50082
Pfscan:PS50294PRIDE:F4I7E1PRINTS:PR00320PROSITE:PS00678
PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:F4I7E1Proteomes:UP000006548
RefSeq:NP_172582.2scanprosite:PS00678SMART:SM00320SMR:F4I7E1
STRING:3702.AT1G11160.1SUPFAM:SSF50978TAIR:AT1G11160UniGene:At.43445
UniProt:F4I7E1
Coordinates (TAIR10) chr1:+:3733406..3739363
Molecular Weight (calculated) 112533.00 Da
IEP (calculated) 6.97
GRAVY (calculated) -0.45
Length 1021 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAKRGYKLQE FVAHSGNVNC LSIGKKTSRL LLTGGDDYKV NLWSIGKTTS PMSLCGHTSP VDSVAFNSEE VLVLAGASSG VIKLWDLEES KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DTNLRVWDTR KKGCIQTYKG HTRGISTIEF SPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KCHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG TTRPEATGVR AIAFHPDGQT LFCGLDDGLK VYSWEPVICR DGVDMGWSTL GDFCINEGKF IGCSYYRNSV GIWVSDISEL
0301: EPYGAVSEDK NECMVKRFSV LNDQSERMGS GPRGSVSPDY ETREIKNIYV DSTGGNLNVA QNPGSLKATL PLESGKVATM VSEKQNAAYF GPAGDKYSST
0401: SRDSDSGEES SYSERESIPF SRTKSGMLLR PAHVRKTLAK FEESKQSAVV QSATRKKSGL AVEEEPQTQN AFLSEQNASK PFDAEDSIIK GITNKFEKAL
0501: SSEPPTDEAN RMFLKPPRIH RSSNSKYNDT RRAMSADPAT FGKGGMENSG DVEDIPSKTE RVLSREKPGD EQKNTEYPSG SRELNPVKIV EGVNVVSGRT
0601: RSLVEKFERG EKTTHTEGAS TTIEQNNNAV QEDPRKTSRQ TGETPVISTR RARSTPARVM PIVLNRDSNV TSDEPPLTQP ARTSSFPVMP VILNQASNVT
0701: YDEPSVALTQ ESRTSHARIL PVTFNQATNI TSEEASVTLR RQRRNSAARV RPVLLSQATS HECPVTSVRP LRTSPARVMP TKLNQSVNMT SDTSHIASMH
0801: RVSPTQMLAT PTVIDQVADM TLDETHATQI QPACDNMPQK EEPNISDRED DSDITENLML THNEFLSTLQ SRLTKLQIVR HFWERSDVKG AIGALRKLTD
0901: QSVQADVISI LTEKIEILTL DMFSQLVPVL TSLLGSRTER PVNVSLDMLL KLVAVFGTVI RSTVSAPRIV GVDLHANERL EICQICSAGL HKIQRILPVL
1001: ARRGGLITRK AQELNLVLQE P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)