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AT4G11230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Riboflavin synthase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Riboflavin synthase-like superfamily protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: oxidation reduction; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), Cytochrome b245, heavy chain (InterPro:IPR000778), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase protein F (TAIR:AT1G64060.1); Has 2278 Blast hits to 2159 proteins in 340 species: Archae - 6; Bacteria - 242; Metazoa - 694; Fungi - 630; Plants - 513; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G11230-MONOMEREC:1.11.1.-EC:1.6.3.-eggNOG:ENOG410XNZY
eggNOG:KOG0039EMBL:AL096882EMBL:AL161531EMBL:CP002687
EnsemblPlants:AT4G11230EnsemblPlants:AT4G11230.1entrez:826725Gene3D:1.10.238.10
GeneID:826725Genevisible:Q9SUT8GO:GO:0004601GO:GO:0016021
GO:GO:0046872GO:GO:0050664Gramene:AT4G11230.1hmmpanther:PTHR11972
hmmpanther:PTHR11972:SF69HOGENOM:HOG000216670InParanoid:Q9SUT8InterPro:IPR000778
InterPro:IPR011992InterPro:IPR013112InterPro:IPR013121InterPro:IPR013130
InterPro:IPR013623InterPro:IPR017927InterPro:IPR017938iPTMnet:Q9SUT8
KEGG:ath:AT4G11230KO:K13447OMA:CHEFNQTPaxDb:Q9SUT8
PeroxiBase:3288Pfam:PF01794Pfam:PF08022Pfam:PF08030
Pfam:PF08414Pfam:Q9SUT8Pfscan:PS51384PhylomeDB:Q9SUT8
PIR:T13014PRIDE:Q9SUT8PRINTS:PR00466PRO:PR:Q9SUT8
PROSITE:PS51384ProteinModelPortal:Q9SUT8Proteomes:UP000006548Reactome:R-ATH-209968
RefSeq:NP_192862.2SMR:Q9SUT8STRING:3702.AT4G11230.1SUPFAM:SSF47473
SUPFAM:SSF52343SUPFAM:SSF63380TAIR:AT4G11230TMHMM:TMhelix
UniGene:At.33579UniProt:Q9SUT8
Coordinates (TAIR10) chr4:-:6840791..6845587
Molecular Weight (calculated) 106958.00 Da
IEP (calculated) 8.58
GRAVY (calculated) -0.23
Length 941 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMSFSGGTH NDRWGSDLAS AGEFTQSFPS LPATYSPSPS SSSSSGEELL EVTIEFPSGV IINIDSVTGT GTDISGTDLE ITSCSDSGSG SRSLSLGWSA
101: SSERLTAGTN SKQQIQKISR RGYGYSSRSA PEPVVPHRGE ITDSVNLPRA LSQRPTRPNR DGSGTERAIH GLKFISSKEN GIVDWNDVQN NFAHLSKDGY
201: LFKSDFAHCI GLENENSKEF ADELFDALCR RRRIMVDKIN LQELYEFWYQ ITDESFDSRL QIFFNMVKNG DGRITENEVK EIIILSASAN NLSRLRERAE
301: EYAALIMEEL APDGLYSQYI ELKDLEILLL EKDISHSYSL PFSQTSRALS QNLKDRRWRM SRNLLYSLQD NWKRIWVLTL WFVIMAWLFM WKCYQYKHKD
401: AFHVMGYCLV MAKGAAETLK FNMALILLPV CRNTITYLRS TALSHSVPFD DCINFHKTIS VAIISAMLLH ATSHLACDFP RILASTDTDY KRYLVKYFGV
501: TRPTYFGLVN TPVGITGIIM VAFMLIAFTL ASRRCRRNLT KLPKPFDKLT GYNAFWYSHH LLLTVYVLLV IHGVSLYLEH KWYRKTVWMY LAVPVLLYVG
601: ERIFRFFRSR LYTVEICKVV IYPGNVVVLR MSKPTSFDYK SGQYVFVQCP SVSKFEWHPF SITSSPGDDY LSIHIRQRGD WTEGIKKAFS VVCHAPEAGK
701: SGLLRADVPN QRSFPELLID GPYGAPAQDH WKYDVVLLVG LGIGATPFVS ILRDLLNNII KQQEQAECIS GSCSNSNISS DHSFSCLNSE AASRIPQTQR
801: KTLNTKNAYF YWVTREQGSF DWFKEIMNEI ADSDRKGVIE MHNYLTSVYE EGDTRSNLLT MIQTLNHAKN GVDIFSGTKV RTHFGRPKWK KVLSKISTKH
901: RNARIGVFYC GVPSLGKELS TLCHEFNQTG ITRFDFHKEQ F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)