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AT4G14750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.969
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : IQ-domain 19
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
IQ-domain 19 (IQD19); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 26 (TAIR:AT3G16490.1); Has 2338 Blast hits to 1945 proteins in 201 species: Archae - 4; Bacteria - 168; Metazoa - 612; Fungi - 134; Plants - 1079; Viruses - 66; Other Eukaryotes - 275 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEXFeggNOG:ENOG410Y92IEMBL:CP002687EnsemblPlants:AT4G14750
EnsemblPlants:AT4G14750.1entrez:827130GeneID:827130Gramene:AT4G14750.1
hmmpanther:PTHR32295hmmpanther:PTHR32295:SF43InParanoid:F4JIF3InterPro:IPR000048
InterPro:IPR025064iPTMnet:F4JIF3KEGG:ath:AT4G14750OMA:MESECGS
PaxDb:F4JIF3Pfam:PF00612Pfam:PF13178Pfscan:PS50096
PRIDE:F4JIF3PROSITE:PS50096ProteinModelPortal:F4JIF3Proteomes:UP000006548
RefSeq:NP_193211.2SMART:SM00015STRING:3702.AT4G14750.1SUPFAM:SSF101447
TAIR:AT4G14750tair10-symbols:IQD19UniGene:At.33246UniProt:F4JIF3
Coordinates (TAIR10) chr4:+:8470449..8471903
Molecular Weight (calculated) 43911.20 Da
IEP (calculated) 10.15
GRAVY (calculated) -0.83
Length 387 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKTSKWFRS LLTGKKERTK EHIIQSECVF TSSIPGTPKE KRRWSFRRSS ATGPPPPACA ITLKDSPPPP PPPPPPPPLQ QPFVVEIVDN EDEQIKNVSA
101: EEIEEFAAIK IQACYRSHLA RKALRALKGL VKLQALVRGH LVRKQATATL RCMQALITLQ AKAREQRIRM IGGDSTNPRT SIHKTRINNF YHENEENIKI
201: VEMDIQSKMY SPAPSALTEM SPRAYSSHFE DCNSFNTAQS SPQCFSRFKE YYNGDTLSSY DYPLFPNYMA NTQSSKAKAR SQSAPKQRPP EIYEKQMSGR
301: RRSSMEAPRN NGVPRAVRMQ RSSSQLGSNT AKESQQHHHH QYYPWMAIKL DRSNISLMES ECGSTSTVMT NTNYGRHVDV QGNNNMY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)