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AT1G64180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : intracellular protein transport protein USO1-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
intracellular protein transport protein USO1-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41620.1); Has 2997 Blast hits to 2464 proteins in 355 species: Archae - 17; Bacteria - 245; Metazoa - 1676; Fungi - 267; Plants - 224; Viruses - 17; Other Eukaryotes - 551 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II2NeggNOG:ENOG410YF2FEMBL:CP002684EnsemblPlants:AT1G64180
EnsemblPlants:AT1G64180.1entrez:842722Gene3D:1.25.40.180GeneID:842722
GO:GO:0005886GO:GO:0009506Gramene:AT1G64180.1InParanoid:F4I5B1
InterPro:IPR016021KEGG:ath:AT1G64180ncoils:CoilOMA:EEQHSAN
PaxDb:F4I5B1PRIDE:F4I5B1ProteinModelPortal:F4I5B1Proteomes:UP000006548
RefSeq:NP_564826.1STRING:3702.AT1G64180.1TAIR:AT1G64180UniGene:At.26404
UniProt:F4I5B1
Coordinates (TAIR10) chr1:+:23821640..23824193
Molecular Weight (calculated) 67943.80 Da
IEP (calculated) 9.25
GRAVY (calculated) -1.07
Length 593 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSKEEEEEE EEEDDGGEGQ KGKRFIEKLR RRAVFVGHRS VFRRPSTPVH ISFNPNKNPS SASSRKLAAS LWEFYQYYDN DHLIHPPAAT KMHRAPLGSA
101: GPSNSRRLRH GHGKAAVADN NGIELTDHQP ESAGSIRRQI GQMLMKHHHL TERNDHALQP VSPTSYDSSL EFRGRRRAGE PNNNIKTSTE LLKVLNRIWI
201: LEEQHSANIS LIKSLKTELA HSRARIKDLL RCKQADKRDM DDFVKQLAEE KLSKGTKEHD RLSSAVQSLE DERKLRKRSE SLYRKLAQEL SEVKSTLSNC
301: VKEMERGTES KKILERLCDE FAKGIKSYER EIHGLKQKLD KNWKGWDEQD HMILCIAESW LDERIQSGNG SALEKLEFEI ETFLKTNQNA DSNEIARNRR
401: TSLESVPFNA MSAPIWEVDR EEEEDSGGSG SNCFELKKHG SDVAKPPRGD ETEKPELIKV GVSERPQRRS QSPSSLQVKF EDQMAWAMSS NEKKKTRANE
501: MEPETEKCGK ETNNVVGEMI RTHRRLSSET REIDEASCSY PSRRRESPIR QWNTRTVTPD LGAPRGVKDN TLKTKLSEAR TTSSRPRVRL FKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)