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AT1G59840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cofactor assembly of complex C
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cofactor assembly of complex C (CCB4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytochrome b6f complex assembly; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2930 (InterPro:IPR021325); Has 391 Blast hits to 391 proteins in 82 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG8KeggNOG:ENOG411065MEMBL:AC007258EMBL:AK175262
EMBL:AK175368EMBL:AK221539EMBL:BT010443EMBL:CP002684
EnsemblPlants:AT1G59840EnsemblPlants:AT1G59840.1EnsemblPlants:AT1G59840.2entrez:842278
GeneID:842278Genevisible:Q6NQK9GO:GO:0009507GO:GO:0009535
GO:GO:0010190GO:GO:0016021Gramene:AT1G59840.1Gramene:AT1G59840.2
hmmpanther:PTHR34943hmmpanther:PTHR34943:SF2InParanoid:Q6NQK9InterPro:IPR021325
KEGG:ath:AT1G59840OMA:NTQGVICPaxDb:Q6NQK9Pfam:PF11152
PhylomeDB:Q6NQK9PIR:E96622PRIDE:Q6NQK9PRO:PR:Q6NQK9
ProteinModelPortal:Q6NQK9Proteomes:UP000006548RefSeq:NP_176193.2RefSeq:NP_974051.1
STRING:3702.AT1G59840.1TAIR:AT1G59840tair10-symbols:CCB4UniGene:At.36772
UniProt:Q6NQK9
Coordinates (TAIR10) chr1:+:22026569..22028174
Molecular Weight (calculated) 32224.20 Da
IEP (calculated) 9.70
GRAVY (calculated) 0.11
Length 297 amino acids
Sequence (TAIR10)
(BLAST)
001: MEARIILLRI QIPWSANRQF SHPPLDFPRF IRASSSSTSQ KPKTYEGPKP RKNLVADFIS KNDDLVRSLP IYVGGASLLA VLFNRTVSGI APVADASSSQ
101: SRADLLALGL AVTNLLTGLV WLSIRPKSIT PVNPKGVECK VVESDLPASM VSELLWAWES LKVATCCKSL VIVYNGICLI QIGMVAESPE DKKTVIVKTD
201: KLMQGSVYRG VMKSKAQSYL ANLSLYPGRS ELPFLPANTQ AVILQPLGDK GIAVIGGNTI RGFTSSDQAW ISSIGEKLDA TLGRYFVDSD EISRVTV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)