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AT1G56440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: translocon at the outer membrane of chloroplasts 64-III (TAIR:AT3G17970.1); Has 12676 Blast hits to 9635 proteins in 732 species: Archae - 310; Bacteria - 2903; Metazoa - 3634; Fungi - 1231; Plants - 1760; Viruses - 0; Other Eukaryotes - 2838 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111KG3eggNOG:KOG4648EMBL:AK227444EMBL:BT015811
EMBL:BT021115EMBL:CP002684EnsemblPlants:AT1G56440EnsemblPlants:AT1G56440.1
entrez:842097ExpressionAtlas:Q5XF05Gene3D:1.25.40.10GeneID:842097
Gramene:AT1G56440.1hmmpanther:PTHR22904hmmpanther:PTHR22904:SF323HOGENOM:HOG000083993
InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734InterPro:IPR025986
Pfam:PF00515Pfam:PF13181Pfam:PF13414Pfam:PF13877
Pfscan:PS50005Pfscan:PS50293PhylomeDB:Q5XF05PROSITE:PS50005
PROSITE:PS50293Proteomes:UP000006548RefSeq:NP_176039.2SMART:SM00028
SMR:Q5XF05STRING:3702.AT1G56440.2SUPFAM:SSF48452TAIR:AT1G56440
tair10-symbols:TPR5UniGene:At.42775UniProt:Q5XF05
Coordinates (TAIR10) chr1:-:21138765..21141482
Molecular Weight (calculated) 53643.80 Da
IEP (calculated) 9.11
GRAVY (calculated) -0.70
Length 476 amino acids
Sequence (TAIR10)
(BLAST)
001: MARSPSKHGR DQTQDFQGFF NDLQDWELSL KDKDKKIKQQ PANSSNPSSE TFRPSGSGKY DFAKKYRSIR DLSSSLIGES LLDSSSEKEQ GNEFFKQKKF
101: NEAIDCYSRS IALSPNAVTY ANRAMAYLKI KRYREAEVDC TEALNLDDRY IKAYSRRATA RKELGMIKEA KEDAEFALRL EPESQELKKQ YADIKSLLEK
201: EIIEKATGAM QSTAQELLKT SGLDKKIQKP KTEMTSKPVT LVAKTNRDIV QPVLGSNESS GKKLIENIQP EEKSKEGSMK IPAITEILDS KKVTPGSQSY
301: EKEAKPSDRN GTQPSGPENQ VSKQLELKPS VQELAAHAAS LAMTEASKNI KTPKSAYEFE NSWRSFSGDS ALRSQLLKVT TPSSLPQIFK NALTSPVLVD
401: IIKCVASFFT EDMDLAVKYI ENLTKVPRFN MLVMCLTSTE KNELLKIWED VFCNKATPME YAEVLDKLRS RYCLKQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)