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AT1G56130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich repeat transmembrane protein kinase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G56140.1); Has 183160 Blast hits to 131873 proteins in 4617 species: Archae - 129; Bacteria - 16542; Metazoa - 50297; Fungi - 10850; Plants - 82984; Viruses - 436; Other Eukaryotes - 21922 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G56130-MONOMEREC:2.7.11.1eggNOG:ENOG410IK0IeggNOG:ENOG410XSG4
EMBL:AC009894EMBL:AC069159EMBL:CP002684EMBL:FJ708662
EnsemblPlants:AT1G56130EnsemblPlants:AT1G56130.1entrez:842065Gene3D:2.60.120.200
Gene3D:3.80.10.10GeneID:842065Genevisible:C0LGH2GO:GO:0004674
GO:GO:0005524GO:GO:0005886GO:GO:0016021hmmpanther:PTHR27006
hmmpanther:PTHR27006:SF44HOGENOM:HOG000116550InParanoid:C0LGH2InterPro:IPR000719
InterPro:IPR001245InterPro:IPR001611InterPro:IPR008271InterPro:IPR011009
InterPro:IPR013320InterPro:IPR021720InterPro:IPR032675KEGG:ath:AT1G56130
OMA:KIQAPREPaxDb:C0LGH2Pfam:C0LGH2Pfam:PF07714
Pfam:PF11721Pfam:PF13855Pfscan:PS50011PhylomeDB:C0LGH2
PIR:F96602PRIDE:C0LGH2PRO:PR:C0LGH2PROSITE:PS00108
PROSITE:PS50011ProteinModelPortal:C0LGH2Proteomes:UP000006548RefSeq:NP_176009.1
scanprosite:PS00108SMART:SM00220SMR:C0LGH2STRING:3702.AT1G56130.1
SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT1G56130TMHMM:TMhelix
UniGene:At.52228UniProt:C0LGH2
Coordinates (TAIR10) chr1:-:20994931..21000887
Molecular Weight (calculated) 113048.00 Da
IEP (calculated) 6.90
GRAVY (calculated) -0.10
Length 1032 amino acids
Sequence (TAIR10)
(BLAST)
0001: MTRIRRSPCL LLLIIWFMCI AGSVQVVQSQ NQTGATTHPD EARALNSIFA AWKIQAPREW NISGELCSGA AIDASVLDSN PAYNPLIKCD CSFQNSTICR
0101: ITNIKVYAID VVGPIPPELW TLTYLTNLNL GQNVLTGSLP PAIGNLTRMQ WMTFGINALS GPVPKEIGLL TDLRLLGISS NNFSGSIPDE IGRCTKLQQM
0201: YIDSSGLSGR IPLSFANLVQ LEQAWIADLE VTDQIPDFIG DWTKLTTLRI IGTGLSGPIP SSFSNLTSLT ELRLGDISSG SSSLDFIKDM KSLSVLVLRN
0301: NNLTGTIPST IGEHSSLRQV DLSFNKLHGP IPASLFNLSQ LTHLFLGNNT LNGSFPTQKT QSLRNVDVSY NDLSGSLPSW VSLPSLKLNL VANNFTLEGL
0401: DNRVLPGLNC LQKNFPCNRG KGIYSDFSIN CGGPEKRSVT GALFEREDED FGPASFFVSA GQRWAASSVG LFAGSSNNIY IATSQSQFVN TLDSELFQSA
0501: RLSASSVRYY GLGLENGGYT VTLQFAEIQI LGSTSTTWKG LGRRRFDIYV QGRLVEKDFD VRRTAGDSTV RAVQRVYKAN VSENHLEVHL FWAGKGTCCI
0601: PIQGAYGPLI SAVSATPDFT PTVANKPPSK GKNRTGTIVG VIVGVGLLSI LAGVVMFTIR KRRKRYTDDE ELLGMDVKPY IFTYSELKSA TQDFDPSNKL
0701: GEGGFGPVYK GNLNDGRVVA VKLLSVGSRQ GKGQFVAEIV AISSVLHRNL VKLYGCCFEG EHRMLVYEYL PNGSLDQALF GDKTLHLDWS TRYEICLGVA
0801: RGLVYLHEEA SVRIVHRDVK ASNILLDSRL VPQISDFGLA KLYDDKKTHI STRVAGTIGY LAPEYAMRGH LTEKTDVYAF GVVALELVSG RPNSDENLEE
0901: EKKYLLEWAW NLHEKSRDIE LIDDKLTDFN MEEAKRMIGI ALLCTQTSHA LRPPMSRVVA MLSGDVEIGD VTSKPGYVSD WRFDDTTGSS LSGFQIKDTT
1001: GYSMSLVAPG SEISPRDSDF KPMLGSKINE GR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)