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AT1G55180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.534
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phospholipase D alpha 4
Curator
Summary (TAIR10)
member of C2-PLD. subfamily Represents a phospholipase D (PLD) gene with four exons, hence it is a member of the alpha class. Its amino acid sequence is quite different from other PLDs, therefore it might possess unique structural and/or catalytic properties.
Computational
Description (TAIR10)
phospholipase D alpha 4 (PLDEPSILON); CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase D alpha 1 (TAIR:AT3G15730.1); Has 1995 Blast hits to 1528 proteins in 409 species: Archae - 2; Bacteria - 580; Metazoa - 308; Fungi - 419; Plants - 534; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
Protein Annotations
BioGrid:27186BRENDA:3.1.4.4EC:3.1.4.4eggNOG:COG1502
eggNOG:KOG1329EMBL:AC027034EMBL:CP002684EnsemblPlants:AT1G55180
EnsemblPlants:AT1G55180.1entrez:841961Gene3D:2.60.40.150GeneID:841961
Genevisible:Q9C888GO:GO:0004630GO:GO:0005509GO:GO:0005886
GO:GO:0006970GO:GO:0006995GO:GO:0009395GO:GO:0009791
GO:GO:0016036GO:GO:0016049GO:GO:0045848GO:GO:0046470
GO:GO:0048364GO:GO:0051301GO:GO:0051365GO:GO:0070290
Gramene:AT1G55180.1gramene_pathway:3.1.4.4gramene_pathway:LIPASYN-PWYgramene_pathway:PWY-3561
hmmpanther:PTHR18896hmmpanther:PTHR18896:SF79HOGENOM:HOG000240112InParanoid:Q9C888
InterPro:IPR000008InterPro:IPR001736InterPro:IPR011402InterPro:IPR015679
InterPro:IPR024632InterPro:IPR025202KEGG:00564+3.1.4.4KEGG:00565+3.1.4.4
KEGG:ath:AT1G55180KO:K01115OMA:LYQDAHHPANTHER:PTHR18896
PaxDb:Q9C888Pfam:PF00168Pfam:PF12357Pfam:PF13091
Pfam:Q9C888Pfscan:PS50035PhylomeDB:Q9C888PIR:E96593
PIRSF:PIRSF036470PRIDE:Q9C888PRO:PR:Q9C888PROSITE:PS50035
ProteinModelPortal:Q9C888Proteomes:UP000006548RefSeq:NP_175914.1SMART:SM00155
STRING:3702.AT1G55180.1SUPFAM:SSF49562SUPFAM:SSF56024TAIR:AT1G55180
tair10-symbols:PLDALPHA4tair10-symbols:PLDEPSILONUniGene:At.37104UniProt:Q9C888
Coordinates (TAIR10) chr1:-:20585057..20587629
Molecular Weight (calculated) 86774.70 Da
IEP (calculated) 7.62
GRAVY (calculated) -0.37
Length 762 amino acids
Sequence (TAIR10)
(BLAST)
001: MELEEQKKYF HGTLEITIFD ATPFSPPFPF NCICTKPKAA YVTIKINKKK VAKTSSEYDR IWNQTFQILC AHPVTDTTIT ITLKTRCSVL GRFRISAEQI
101: LTSNSAVING FFPLIADNGS TKRNLKLKCL MWFRPAYLEP GWCRALEEAS FQGIRNASFP QRSNCRVVLY QDAHHKATFD PRVDDVPFNA RNLWEDVYKA
201: IESARHLVYI AGWALNPNLV LVRDNETEIP HAVGVTVGEL LKRKSEEGVA VRVMLWNDET SLPMIKNKGV MRTNVERALA YFRNTNVVCR LCPRLHKKLP
301: TAFAHHQKTI TLDTRVTNSS TKEREIMSFL GGFDLCDGRY DTEEHSLFRT LGTEADFYQT SVAGAKLSRG GPREPWHDCH VSVVGGAAWD VLKNFEQRWT
401: KQCNPSVLVN TSGIRNLVNL TGPTEENNRK WNVQVLRSID HISATEMPRG LPVEKSVHDG YVAAIRKAER FIYIENQYFM GSCDHWESKN DKICSGCTNL
501: IPVEIALKIA AKIRARERFA VYIVIPMWPE GPPESETVEE ILHWTRETMS MMYQIIGEAI WEVGDKSHPR DYLNFFCLAN REEKRDGEFE AVSSPHQKTH
601: YWNAQRNRRF MVYVHSKLMI VDDTYILIGS ANINQRSMDG CRDTEIAIGC YQTNTNNTNE IQAYRLSLWY EHTGGKITAD DLSSSEPESL ECVRGLRTIG
701: EQMWEIYSGD KVVDMLGIHL VAYPISVTGD GAVEEVGDGC FPDTKTLVKG KRSKMFPPVL TT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)