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AT5G01930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT5G66460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G01930-MONOMERBRENDA:3.2.1.78CAZy:GH5DNASU:831699
EC:3.2.1.78eggNOG:COG3934eggNOG:ENOG410IG6DEMBL:AK227325
EMBL:AL162351EMBL:BT005831EMBL:CP002688EnsemblPlants:AT5G01930
EnsemblPlants:AT5G01930.1entrez:831699Gene3D:3.20.20.80GeneID:831699
Genevisible:Q9LZV3GO:GO:0005576GO:GO:0009845GO:GO:0016985
GO:GO:0046355Gramene:AT5G01930.1hmmpanther:PTHR31451hmmpanther:PTHR31451:SF17
HOGENOM:HOG000169952InParanoid:Q9LZV3InterPro:IPR001547InterPro:IPR013781
InterPro:IPR017853KEGG:ath:AT5G01930KO:K19355OMA:KWGKAAG
PaxDb:Q9LZV3Pfam:PF00150Pfam:Q9LZV3PhylomeDB:Q9LZV3
PIR:T48214PRIDE:Q9LZV3PRO:PR:Q9LZV3PROSITE:PS00014
ProteinModelPortal:Q9LZV3Proteomes:UP000006548RefSeq:NP_195813.1SMR:Q9LZV3
STRING:3702.AT5G01930.1SUPFAM:SSF51445TAIR:AT5G01930tair10-symbols:AtMAN6
tair10-symbols:MAN6UniGene:At.23739UniGene:At.25601UniProt:Q9LZV3
Coordinates (TAIR10) chr5:-:361189..362867
Molecular Weight (calculated) 50624.90 Da
IEP (calculated) 6.32
GRAVY (calculated) -0.26
Length 448 amino acids
Sequence (TAIR10)
(BLAST)
001: MKDQLGFRIV LCSAVFIILT QNRALADLDS ESHEVNSESV GEEQWEMVQR KGMQFTLNGQ PFYVNGFNTY WMMTLAADNS TRGKVTEVFQ QASAVGMTVG
101: RTWAFNDGQW RALQKSPSVY DEEVFKALDF VLSEARKYKI RLILSLVNNW DAYGGKAQYV KWGNASGLNL TSDDDFFTNP TLRNFYQSHV RTVLNRVNTF
201: TNITYKNDPT IFAWELMNEP RCPSDPSGDK LQSWIQEMAV FVKSLDAKHL VEIGLEGFYG PSAPARTRFN PNPYAAQVGT DFIRNNQVLG IDFASVHVYP
301: DSWISPAVSN SFLEFTSSWM QAHVEDAEMY LGMPVLFTEF GVSAHDPGFN TSFRDMMLNT VYKMTLNSTR KGGAGAGSLV WQVFPQGAEF MDDGYAVYLT
401: RAHTASKIIS LQSKRLAIFN SLCSWRCRWG CKKKNQTALD ALLSHDEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)