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AT1G05310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G36710.1); Has 4576 Blast hits to 3466 proteins in 439 species: Archae - 11; Bacteria - 724; Metazoa - 994; Fungi - 355; Plants - 1773; Viruses - 6; Other Eukaryotes - 713 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G05310-MONOMEREC:3.1.1.11eggNOG:COG4677eggNOG:ENOG410IMH0
EMBL:AC000098EMBL:CP002684EnsemblPlants:AT1G05310EnsemblPlants:AT1G05310.1
entrez:837030Gene3D:2.160.20.10GeneID:837030Genevisible:O23038
GO:GO:0005576GO:GO:0005618GO:GO:0030599GO:GO:0042545
GO:GO:0045330GO:GO:0045490Gramene:AT1G05310.1gramene_pathway:3.1.1.11
gramene_pathway:PWY-1081hmmpanther:PTHR31321hmmpanther:PTHR31321:SF8HOGENOM:HOG000217409
InParanoid:O23038InterPro:IPR000070InterPro:IPR011050InterPro:IPR012334
InterPro:IPR033131KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT1G05310
OMA:GWNDFNDPaxDb:O23038Pfam:O23038Pfam:PF01095
PhylomeDB:O23038PIR:H86187PRIDE:O23038PRO:PR:O23038
PROSITE:PS00503ProteinModelPortal:O23038Proteomes:UP000006548RefSeq:NP_172023.1
scanprosite:PS00503SMR:O23038STRING:3702.AT1G05310.1SUPFAM:SSF51126
TAIR:AT1G05310UniGene:At.50780UniPathway:UPA00545UniProt:O23038
Coordinates (TAIR10) chr1:-:1550615..1552434
Molecular Weight (calculated) 43352.20 Da
IEP (calculated) 8.09
GRAVY (calculated) -0.22
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIISLSISI GIAIIAVLAS KTLFKTHPEA FGIKAISYSF KKSLCDHHHH HHHHHHHHHR HKPSDTKRKV SICDDFPKNI PPLDTDTTSY LCVDKNGCCN
101: FTTVQSAVDA VGNFSQRRNV IWINSGMYYE KVVIPKTKPN ITLQGQGFDI TAIAWNDTAY SANGTFYCAT VQVFGSQFVA KNISFMNVAP IPKPGDVGAQ
201: AVAIRIAGDE SAFVGCGFFG AQDTLHDDRG RHYFKDCYIQ GSIDFIFGNA KSLYQDCRII SMANQLSPGS KAVNGAVTAN GRSSKDENSG FSFVNCTIGG
301: TGHVWLGRAW RPYSRVVFVS TTMTDVIAPE GWNNFNDPSR DATIFYGEYN CSGPGADMSK RAPYVQKLNE TQVALLINTS FIDGDQWLQF SDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)