AT1G05310.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Pectin lyase-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G36710.1); Has 4576 Blast hits to 3466 proteins in 439 species: Archae - 11; Bacteria - 724; Metazoa - 994; Fungi - 355; Plants - 1773; Viruses - 6; Other Eukaryotes - 713 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:1550615..1552434 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 43352.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.09 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 393 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKIISLSISI GIAIIAVLAS KTLFKTHPEA FGIKAISYSF KKSLCDHHHH HHHHHHHHHR HKPSDTKRKV SICDDFPKNI PPLDTDTTSY LCVDKNGCCN 101: FTTVQSAVDA VGNFSQRRNV IWINSGMYYE KVVIPKTKPN ITLQGQGFDI TAIAWNDTAY SANGTFYCAT VQVFGSQFVA KNISFMNVAP IPKPGDVGAQ 201: AVAIRIAGDE SAFVGCGFFG AQDTLHDDRG RHYFKDCYIQ GSIDFIFGNA KSLYQDCRII SMANQLSPGS KAVNGAVTAN GRSSKDENSG FSFVNCTIGG 301: TGHVWLGRAW RPYSRVVFVS TTMTDVIAPE GWNNFNDPSR DATIFYGEYN CSGPGADMSK RAPYVQKLNE TQVALLINTS FIDGDQWLQF SDL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)