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AT5G48920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tracheary element differentiation-related 7
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
tracheary element differentiation-related 7 (TED7); BEST Arabidopsis thaliana protein match is: tracheary element differentiation-related 6 (TAIR:AT1G43790.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3ZTeggNOG:ENOG410ZC3HEMBL:AB017061EMBL:BT010840
EMBL:BT011316EMBL:CP002688EnsemblPlants:AT5G48920EnsemblPlants:AT5G48920.1
entrez:834950GeneID:834950GO:GO:0016021Gramene:AT5G48920.1
hmmpanther:PTHR35697hmmpanther:PTHR35697:SF1KEGG:ath:AT5G48920OMA:DIHKTEK
Proteomes:UP000006548RefSeq:NP_199703.1STRING:3702.AT5G48920.1SUPFAM:SSF81995
TAIR:AT5G48920tair10-symbols:TED7TMHMM:TMhelixUniGene:At.49147
UniProt:Q9FI79
Coordinates (TAIR10) chr5:+:19835405..19836022
Molecular Weight (calculated) 22751.10 Da
IEP (calculated) 7.28
GRAVY (calculated) -0.60
Length 205 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASVEYFPY YSPPSHQHPL PSPVPPPPSH ISPPPPPFSP PHHPPPPHFS PPHQPPPSPY PHPHPPPPSP YPHPHQPPPP PHVLPPPPPT PAPGHHVIIV
101: VVISLGSLFF LAFLAAALFC YLKKRRKSST KAEIIEFDEH LKVQETIVQG PHGEQTRVVM LEEDIHLVED IHKTEKLSRP SHLSSTGRHA IDISDPNHHF
201: TEQKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)