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AT1G58370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:12154138 (2002): extracellular region
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
Curator
Summary (TAIR10)
Encodes a protein with xylanase activity.
Computational
Description (TAIR10)
RXF12; FUNCTIONS IN: endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (TAIR:AT1G10050.1); Has 2572 Blast hits to 2336 proteins in 449 species: Archae - 10; Bacteria - 1384; Metazoa - 31; Fungi - 355; Plants - 353; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G58370-MONOMERCAZy:CBM22CAZy:GH10eggNOG:COG3693
eggNOG:ENOG410IHCYEMBL:AB008015EMBL:AB077822EMBL:AC008051
EMBL:CP002684EnsemblPlants:AT1G58370EnsemblPlants:AT1G58370.1entrez:842206
Gene3D:2.60.120.260Gene3D:3.20.20.80GeneID:842206GO:GO:0005618
GO:GO:0031176GO:GO:0045493Gramene:AT1G58370.1hmmpanther:PTHR31490
hmmpanther:PTHR31490:SF1HOGENOM:HOG000237473InterPro:IPR001000InterPro:IPR003305
InterPro:IPR008979InterPro:IPR013781InterPro:IPR017853KEGG:ath:AT1G58370
OMA:MVAGLQVPfam:PF00331Pfam:PF02018Pfscan:PS51760
PhylomeDB:Q9SM08PIR:T52467PRINTS:PR00134PROSITE:PS51760
Proteomes:UP000006548RefSeq:NP_176133.1SMART:SM00633SMR:Q9SM08
STRING:3702.AT1G58370.1SUPFAM:SSF49785SUPFAM:SSF51445TAIR:AT1G58370
tair10-symbols:ATXYN1tair10-symbols:RXF12UniGene:At.440unipathway:UPA00114
UniProt:Q9SM08
Coordinates (TAIR10) chr1:+:21684751..21688209
Molecular Weight (calculated) 102464.00 Da
IEP (calculated) 6.10
GRAVY (calculated) -0.34
Length 917 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVSRKDNEE PEKQNNNNVA SIIGSDRTNV IVNHDFSSGM HSWHPNCCEA FVVTAESNVS HGVLDPSKCG SYVVVKNRKE TWQGLEQDIT NRVKPCSLYK
101: VSATVAVSGP VHGLVEVMAT LKLESQQSQT NYQFIAKTCV FKEKWVRLEG MFSLPSLPEK VVFYLEGPSP GIDLLIQSVT IHRESEPELE RVTAEDETIV
201: VNPNFEDGLN NWSGRSCKIV LHDSMADGKI VPESGKVFAS ATERTQNWNG IQQEITGKVQ RKRVYEATAV VRIYGNNVTT ATVQATLWVQ NPNQRDQYIG
301: ISTVQATDKE WIHLKGKFLL NGSASRVVIY IEGPPPGTDI LLNSLTVKHA EKIPPSPPPS IENPAFGVNI LTNSHLSDDT TNGWFSLGNC TLSVAEGSPR
401: ILPPMARDSL GAHERLSGRY ILVTNRTQTW MGPAQMITDK LKLFLTYQIS VWVKVGSGIN SPQNVNVALG IDSQWVNGGQ VEINDDRWHE IGGSFRIEKN
501: PSKALVYVQG PSSGIDLMVA GLQIFPVDRL ARIKHLKRQC DKIRKRDVIL KFAGVDSSKF SGASVRVRQI RNSFPVGTCI SRSNIDNEDF VDFFLKNFNW
601: AVFANELKWY WTEPEQGKLN YQDADDMLNL CSSNNIETRG HCIFWEVQAT VQQWIQNMNQ TDLNNAVQNR LTDLLNRYKG KFKHYDVNNE MLHGSFYQDK
701: LGKDIRVNMF KTAHQLDPSA TLFVNDYHIE DGCDPKSCPE KYTEQILDLQ EKGAPVGGIG IQGHIDSPVG PIVCSALDKL GILGLPIWFT ELDVSSVNEH
801: IRADDLEVMM WEAFGHPAVE GIMLWGFWEL FMSRDNSHLV NAEGDVNEAG KRFLAVKKDW LSHANGHIDQ NGAFPFRGYS GNYAVEVITT SSSKVLKTFG
901: VDKEDSSQVI TVDLQGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)