AT1G54380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : spliceosome protein-related | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
spliceosome protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42510.2); Has 222 Blast hits to 205 proteins in 80 species: Archae - 0; Bacteria - 6; Metazoa - 98; Fungi - 6; Plants - 54; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20298287..20300899 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58342.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.45 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||||||||||||||
| Length | 515 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMTNSDSDHC TPAKTSISGD GLEKESDFKK QLNSEIDPQA SSSQNDAITM EDGAVSVNNR DLQEIKESSF SKGSEQYRVD GALEESLNFE EKEQESEAQR 101: LLEAEKRRLL AEIELGSIFR KSVDVDTLPK IEETMDNDVD KIELVDHTAL VDVVHHPKRP GTAQNEKDTP RKLKKIGDKR NVIEGSGVEN NGKQFRRLYT 201: RKQLESMRFA HIVNQKNLWS EMYSRILPEV VTEYESLVYV KNYKSSKSNR VRGRTESGNE ENLGTEEGTE DPEDYTDDND DYNSILRPAF EVDGEPDFST 301: GPPEDGLEYL RRVRWEAKGI PNVRVAKIDE STYIKKEQSV YMPLIPEIPK CPEYLLPMKE WEDSLLLDFV HLRQTLTQSA NSCEDEIISS QCVEDLLVEM 401: FNKHLHTEED ESFGEVVTDI QGMDSVTRVS KLKKRICLVE KESGLQSSDC KWVVALCASL ETPLDADTCA CLRGLLRKCA SVRAETSLEV GDEEVITMAN 501: MLITIAGRYF GQMGQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)