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AT1G54200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13980.1); Has 1084 Blast hits to 581 proteins in 136 species: Archae - 0; Bacteria - 72; Metazoa - 212; Fungi - 78; Plants - 102; Viruses - 0; Other Eukaryotes - 620 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3V9eggNOG:ENOG410YYWKEMBL:AC005287EMBL:BT029487
EMBL:CP002684EnsemblPlants:AT1G54200EnsemblPlants:AT1G54200.1entrez:841860
GeneID:841860Genevisible:Q9SLL2GO:GO:0005886GO:GO:0009734
GO:GO:0010929GO:GO:0060918Gramene:AT1G54200.1hmmpanther:PTHR33541
hmmpanther:PTHR33541:SF5HOGENOM:HOG000243422KEGG:ath:AT1G54200ncoils:Coil
OMA:MERDFAPPaxDb:Q9SLL2PhylomeDB:Q9SLL2PIR:C96583
Proteomes:UP000006548RefSeq:NP_175822.1TAIR:AT1G54200UniGene:At.37261
UniProt:Q9SLL2
Coordinates (TAIR10) chr1:+:20235855..20236955
Molecular Weight (calculated) 41772.10 Da
IEP (calculated) 9.80
GRAVY (calculated) -1.05
Length 366 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPWDTYNIP LDHQHRLRNR RDHRHPSFSS TLLDQIYRSI DDSSTNSSSM RKTKHQNRED TRVSANRRDD FNRSKNLKTI EPVFFKHSSS SSSDSSGFSS
101: SESDYFYRRS KSSPAISHPK PIRTTVERFE RSPQNHRPNS SNKQEHGSFL KTKSKALKIY SDLKKVKQPI SPGGRLATFL NSIFTGAGNT KKLNKINTTV
201: TSTTAAAAAA SSTTTCSSAS SFSRSCLSKT PSSSEKSKRS VRFCPVNVIF DEDSSKYNNK NNKVYGNNER EYESIRHTLE NRVMEENRRV IEAAKELLRS
301: YQKKNKEVIE VSVEDDEEDD DDDALSCTSS DLFELDNLSA IGIDRYREEL PVYETTRLNT NRIISR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)